PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10016336m | ||||||||
Common Name | CICLE_v10016736mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 259aa MW: 30318.9 Da PI: 5.1894 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.6 | 1.6e-26 | 78 | 168 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ +kw+vtk+ +eHnHel+ Ciclev10016336m 78 EFYVAYGRRTGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRLALRDGDKWVVTKFIKEHNHELM 168 6******************************************99983333.244899********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-24 | 78 | 168 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MESTSNQVID SDESERYLQV AGYDENDLAD DDLSKNIELY TGEVDKILEQ SFESLPSVGD 60 AEEPYIGLEF KSRDDAREFY VAYGRRTGFT VRIHHNRRSR INNVVIGQDF VCSKEGFREK 120 KYMYRKDRVL PPPPITREGC PAMLRLALRD GDKWVVTKFI KEHNHELMSP SKVPWRGSTK 180 NFISEDEKDR RIRELTIELN NERQRFKRRC AAYQEQLNMV FKFVEEHTDH LSGRVKDIVD 240 NIRELEDEQP ENSDCKCV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447973.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Refseq | XP_006492213.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2H5PH10 | 0.0 | A0A2H5PH10_CITUN; Uncharacterized protein | ||||
TrEMBL | V4UAQ9 | 0.0 | V4UAQ9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006492213.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447973.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 4e-37 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10016336m |
Entrez Gene | 18051660 |