PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016232m
Common NameCICLE_v10016232mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 275aa    MW: 30534.5 Da    PI: 8.3688
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016232mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-061839627
                     -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                     C+f++ t  Ck+G+ C+F+H++
  Ciclev10016232m 18 CKFYQGTEGCKHGEACRFSHSM 39
                     **9*9999************95 PP
2zf-CCCH23.31.1e-077192627
                     -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                     C++++  G CkyG++CkF+H++
  Ciclev10016232m 71 CKYHLSAGGCKYGNTCKFSHSK 92
                     ********************95 PP
3zf-CCCH35.81.4e-11122143526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+f++r+G C yG  C+F+H+
  Ciclev10016232m 122 ECPFYMRNGSCAYGVDCRFNHP 143
                      7********************9 PP
4zf-CCCH38.91.4e-12237263127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC++f++tG Cky + CkF+H++
  Ciclev10016232m 237 PGEPLCDYFMKTGNCKYRSACKFHHPK 263
                      589**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.11239IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1781240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-51641IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-41840IPR000571Zinc finger, CCCH-type
SMARTSM003560.196592IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.1226593IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-57094IPR000571Zinc finger, CCCH-type
PfamPF006427.7E-67192IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-57193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.732117145IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4117144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5119144IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9122143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4123142IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6236263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511236264IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8238263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6240264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5241262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKESKGEGLM EKTVQIQCKF YQGTEGCKHG EACRFSHSME KSENPLPFSG VNGMKESKGG  60
SLVEMTGLIG CKYHLSAGGC KYGNTCKFSH SKEKPQTYIK KSEKASPELN FLGLPIRVHE  120
IECPFYMRNG SCAYGVDCRF NHPDPVADEG SDHFNEASNP ASRSWSPNII SRKTVPNLDN  180
HSFHPHWMLK SKFNSLQGSV YPQAKAELAL SSPALGNLTK TADTSTYHQF NEFPERPGEP  240
LCDYFMKTGN CKYRSACKFH HPKNGDGKSP VCTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447207.20.0zinc finger CCCH domain-containing protein 43
RefseqXP_006469940.10.0zinc finger CCCH domain-containing protein 43-like
RefseqXP_024045834.10.0zinc finger CCCH domain-containing protein 43
RefseqXP_024045835.10.0zinc finger CCCH domain-containing protein 43
TrEMBLV4U3F80.0V4U3F8_9ROSI; Uncharacterized protein
STRINGXP_006447207.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1808379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.15e-54C3H family protein