PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10016092m
Common NameCICLE_v10016092mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 301aa    MW: 31733.8 Da    PI: 9.7157
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10016092mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.68.8e-08107132227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      k +lC+ +     Ck+Gd+C+FaHg+
  Ciclev10016092m 107 KSRLCNKYNSAEGCKFGDKCHFAHGE 132
                      6799******99************96 PP
2zf-CCCH375.8e-12267291126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC +fa+ G C +GdrC+FaHg
  Ciclev10016092m 267 FKTKLCENFAK-GSCTFGDRCHFAHG 291
                      69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.73764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.0423765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-63863IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-73962IPR000571Zinc finger, CCCH-type
PfamPF146081.84562No hitNo description
Gene3DG3DSA:4.10.1000.102.4E-13103136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-7104136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112105133IPR000571Zinc finger, CCCH-type
SMARTSM003560.025107132IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5107132IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.61E-14170247IPR004088K Homology domain, type 1
SMARTSM003229.4E-13176246IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.4E-15177245IPR004088K Homology domain, type 1
PROSITE profilePS5008413.9177241IPR004088K Homology domain, type 1
PfamPF000131.8E-11179243IPR004088K Homology domain, type 1
CDDcd001051.60E-13181241No hitNo description
Gene3DG3DSA:4.10.1000.101.6E-16263297IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7266292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-9266296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.084266293IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9267291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MELGGGRKRG RHDGASNGNG GFKKSKQEME NFPTGIGSKS KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGFKA VSQMLNLGGT PAHPPPPPRN SGAPPSFPDG SSPPAVKSRL CNKYNSAEGC  120
KFGDKCHFAH GEWELGRPTV PSYEDPRAMG GPMHGRMGGR LEPPPQSLGA AASFGASATA  180
KISIDAKLAG AIIGKNGVNS KQICRLTGAK LSIRDHEVDP NLRNIELEGT FDQIKQASAM  240
VRELIVNVGS GSGHSMKSNS SSQSNNFKTK LCENFAKGSC TFGDRCHFAH GSEELRKSVI  300
*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3936047e-41FQ393604.1 Vitis vinifera clone SS0AFA25YC11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445923.10.0zinc finger CCCH domain-containing protein 14
RefseqXP_006492659.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-120C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067EZQ20.0A0A067EZQ2_CITSI; Uncharacterized protein
TrEMBLV4TFP60.0V4TFP6_9ROSI; Uncharacterized protein
STRINGXP_006492659.10.0(Citrus sinensis)
STRINGXP_006445923.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-48C3H family protein