PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015986m
Common NameCICLE_v10015986mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 317aa    MW: 36153.3 Da    PI: 5.6762
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015986mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.83e-192875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll ++++q+G g+W+ +a++ g++Rt+k+c++rw++yl
  Ciclev10015986m 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding49.97.3e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Ciclev10015986m  81 RGNLTPQEQFLILELHSKWGNR-WSKIAQCLP-GRTDNEIKNYWRT 124
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.2012379IPR017930Myb domain
SuperFamilySSF466894.03E-3125122IPR009057Homeodomain-like
SMARTSM007173.1E-162777IPR001005SANT/Myb domain
PfamPF002494.0E-172875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-242982IPR009057Homeodomain-like
CDDcd001671.61E-123075No hitNo description
PROSITE profilePS5129418.1580130IPR017930Myb domain
SMARTSM007172.7E-1480128IPR001005SANT/Myb domain
PfamPF002492.0E-1481124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2283129IPR009057Homeodomain-like
CDDcd001676.14E-1185124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MHTMRAARAA GTKRECNSSE EDQQELRRGP WTLEEDTLLT HYIHQHGEGR WNMVAKCAGL  60
KRTGKSCRLR WLNYLKPDIK RGNLTPQEQF LILELHSKWG NRWSKIAQCL PGRTDNEIKN  120
YWRTRVQKQA RQLNIESNSE TFFEAVRCYW MPRLLQKMEQ NSASPNTLLT NSSAQSSNFS  180
IIPSVSSSTL SPLPSTILYN SNQTINENSS SETSPNFFPG DFSKISQLQQ PGITQQPTSP  240
HAYGNNVCSN QIVPNDSYYV DCCGFDMEGY SLTDPIAEMS SYDISSSECQ MAEADWMSND  300
MSDALWNMDD IWQLRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-25251291104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448450.10.0transcription factor MYB62
SwissprotQ9C9G72e-95MYB62_ARATH; Transcription factor MYB62
TrEMBLA0A2H5P5B50.0A0A2H5P5B5_CITUN; Uncharacterized protein
TrEMBLV4UC330.0V4UC33_9ROSI; Uncharacterized protein
STRINGXP_006448450.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26322571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.12e-92myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]