PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10015710m

Common Name

CICLE_v10015710mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 362aa MW: 39443.8 Da PI: 8.3223

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015710m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	5.9e-39	49	109	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ Ciclev10015710m 49 QQPPLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 109 56789*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	2.2E-33	52	107	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	9.0E-28	53	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MLSNCEKMVV ISSTTNEWPQ NHQIDEKNLM ASTGRVMDKA GQEPPQQQQQ PPLKCPRCDS 60 SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASANNSIDG 120 SNPSAAANPN NPHSQRQIHI SSTSNHINPL FFGLSTNPSD MNLPFSTFNS RVVSSLDTIS 180 GYDLQPQLNA LGLGFSSGLI MSNTDAGDCN YRNGFNPNKQ IQEVVTSSNS LLSSYPTFGS 240 SSSSPTIASL LASSLHQPKF MNGVVKSSTE APNHFNNNLA SFEDLQMTAN NNNNNGEAAR 300 IGMMKEVKAE EGQSRMGWNV ECQNQMEQIG LADPSLYWNS TSSVGAWHDP SNIGSSVTSL 360 I*

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MLSNCEKMVV ISSTTNEWPQ NHQIDEKNLM ASTGRVMDKA GQEPPQQQQQ PPLKCPRCDS  60
SNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVKR PASANNSIDG  120
SNPSAAANPN NPHSQRQIHI SSTSNHINPL FFGLSTNPSD MNLPFSTFNS RVVSSLDTIS  180
GYDLQPQLNA LGLGFSSGLI MSNTDAGDCN YRNGFNPNKQ IQEVVTSSNS LLSSYPTFGS  240
SSSSPTIASL LASSLHQPKF MNGVVKSSTE APNHFNNNLA SFEDLQMTAN NNNNNGEAAR  300
IGMMKEVKAE EGQSRMGWNV ECQNQMEQIG LADPSLYWNS TSSVGAWHDP SNIGSSVTSL  360
I*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449371.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	A0A2H5N2T1	0.0	A0A2H5N2T1_CITUN; Uncharacterized protein
TrEMBL	V4UJW4	0.0	V4UJW4_9ROSI; Uncharacterized protein
STRING	XP_006449371.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	4e-41	Dof family protein

Link Out ? help Back to Top
Phytozome	Ciclev10015710m
Entrez Gene	18053440