PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015648m
Common NameCICLE_v10015648mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 375aa    MW: 41334.6 Da    PI: 6.2705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015648mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-183380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEdell++++++ G g+W+t +++ g+ R++k+c++rw +yl
  Ciclev10015648m 33 RGPWTPEEDELLANYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 80
                     89******************************99************97 PP

2Myb_DNA-binding46.48.8e-1591131648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Ciclev10015648m  91 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 131
                      89***************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-222482IPR009057Homeodomain-like
PROSITE profilePS5129416.2052880IPR017930Myb domain
SuperFamilySSF466895.87E-2930127IPR009057Homeodomain-like
SMARTSM007171.1E-133282IPR001005SANT/Myb domain
PfamPF002494.7E-163380IPR001005SANT/Myb domain
CDDcd001672.07E-113580No hitNo description
PROSITE profilePS5129424.40481135IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2483136IPR009057Homeodomain-like
SMARTSM007171.2E-1385133IPR001005SANT/Myb domain
CDDcd001671.55E-1191131No hitNo description
PfamPF002491.4E-1391131IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MRNPSTSPSS TAAAAAAATN KSTPCCSKVG LKRGPWTPEE DELLANYINK EGEGRWRTLP  60
KRAGLLRCGK SCRLRWMNYL RPSVKRGHIA PDEEDLILRL HRLLGNRWSL IAGRIPGRTD  120
NEIKNYWNTH LSKKLISQGI DPRTHKPLNQ EFDPSSADQV TNSNSKASTS KAILNSSSSN  180
PNLTPMTVSS GHLDQRHTSA GCGRMISSIM MINKENGYSP NALVDDHDSE YHQNGMMENP  240
YTSLSNCDHH HDDDGGLGLR SNNVNNVFNE GLSYEVDVDI NYCNDDVFSS FLNSLINEDA  300
FASQHNQQVL QQQQQQHLSN ETIALPNTTT GSSSDPLVST AAASTFGLEA NWESPIMASS  360
LNQDESKRVD EHVE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C5e-25311352105C-Myb DNA-Binding Domain
1msf_C5e-25311352105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445608.10.0transcription factor MYB34
SwissprotQ388503e-82MYB5_ARATH; Transcription repressor MYB5
TrEMBLV4TEQ60.0V4TEQ6_9ROSI; Uncharacterized protein
STRINGXP_006445608.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-83myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]