PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015595m
Common NameCICLE_v10015595mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CO-like
Protein Properties Length: 384aa    MW: 43106.3 Da    PI: 5.6229
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015595mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.52.7e-081554437
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ +++k + l+C+ ++  lC  C +++H+       H
  Ciclev10015595m 15 ALCDFCNSKLAVLYCTADSAKLCLFCDQQIHSAnalslrH 54
                     57*****************************645555555 PP
2zf-B_box18.44.4e-0657100340
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 
                       ++C+++  ++++  C + + +lC+dC   +H +      H+++
  Ciclev10015595m  57 SQICDNCRAEPVSVRCCTENLMLCQDCDWDSHYNssvssvHERS 100
                      579*************************9999556788888766 PP
3CCT64.72.8e-22333377145
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                      R +a+lRYkeK+k+R + K+irYesRKa+A++R+RvKGrFvk++e
  Ciclev10015595m 333 RGNAMLRYKEKKKNRSYGKQIRYESRKARADTRKRVKGRFVKASE 377
                      7789**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.2E-91259IPR000315B-box-type zinc finger
PROSITE profilePS501199.4711259IPR000315B-box-type zinc finger
PfamPF006434.4E-61654IPR000315B-box-type zinc finger
CDDcd000212.83E-71647No hitNo description
PROSITE profilePS501199.07255102IPR000315B-box-type zinc finger
CDDcd000219.43E-65988No hitNo description
SMARTSM003360.9760102IPR000315B-box-type zinc finger
PfamPF062031.1E-16333375IPR010402CCT domain
PROSITE profilePS5101714.753333375IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEDSFKLSPG SSMLALCDFC NSKLAVLYCT ADSAKLCLFC DQQIHSANAL SLRHLRSQIC  60
DNCRAEPVSV RCCTENLMLC QDCDWDSHYN SSVSSVHERS SVEGFSGCPS VTELASFFDL  120
MGDDLLNLGS GFGVYEPKML NFEELAVPTQ NCSVFMSGNK YKKEVYEQLV EIGKRDLVRF  180
NGNGAELGPG TTTSICDQYG YTQSLEVENI DEEKLLNPKT AFTSLLAFPN NTDLREHDRC  240
VADGKLMWDW DPSYPAAQFQ NHSNQPFSSH TPTTEESNNT PIIGPPSDYR PHEFETWEST  300
KVVQGMHHSI PHGSETANEA ITQFDKELLA KNRGNAMLRY KEKKKNRSYG KQIRYESRKA  360
RADTRKRVKG RFVKASEISD VEI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446976.10.0zinc finger protein CONSTANS-LIKE 14 isoform X2
RefseqXP_006468864.10.0zinc finger protein CONSTANS-LIKE 14-like isoform X1
TrEMBLV4UD920.0V4UD92_9ROSI; Uncharacterized protein
STRINGXP_006468864.10.0(Citrus sinensis)
STRINGXP_006446976.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1922677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.13e-67B-box type zinc finger protein with CCT domain