PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10015591m | ||||||||
Common Name | CICLE_v10015581mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 384aa MW: 42860.1 Da PI: 6.4023 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 309 | 343 | 21 | 55 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+ +q+ +WF N+R ++ Ciclev10015591m 309 KWPYPSESQKLALAESTGLDSKQINNWFINQRKRH 343 569*****************************885 PP | |||||||
2 | ELK | 37.4 | 5.5e-13 | 263 | 284 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlr Ysg+L+sLkqEF+ Ciclev10015591m 263 ELKGQLLRRYSGCLSSLKQEFM 284 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-19 | 127 | 171 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.2E-21 | 129 | 167 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.5E-27 | 176 | 227 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-22 | 179 | 225 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.1E-10 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 10.423 | 263 | 283 | IPR005539 | ELK domain |
SMART | SM01188 | 8.6E-8 | 263 | 284 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.843 | 283 | 346 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-19 | 285 | 357 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-12 | 285 | 350 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 288 | 349 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.00E-11 | 295 | 347 | No hit | No description |
Pfam | PF05920 | 1.4E-16 | 303 | 342 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 321 | 344 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009934 | Biological Process | regulation of meristem structural organization | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MDGGSNSTSC MNMMAFGDNS NGLYCPMMMM PLMSSFTHQH HRHDHHHDEH HQHHLDADSN 60 TLFLPLAAAA TTTINNIVPN QNRNSSSGSS LILEDNTTAT ATAINTINNS SARCYFMETN 120 YGSGASSSVK AKIMAHPHYH RLLAAYANCQ KVGAPPEVVA RLEEVCASAA SMGSGGSSCI 180 GQDPALDQFM EAYCEMLTKY EQELSKPFKE AMSFLQKIES QFKSLSISSP NSASSEAIDR 240 NGSSEEDFDV NIDFIDPQAE DQELKGQLLR RYSGCLSSLK QEFMKKRKKG KLPKEARQQL 300 LDWWSKHYKW PYPSESQKLA LAESTGLDSK QINNWFINQR KRHWKPSEDM QFMVMDATQP 360 QYYIDSTVMG NPFPMDLSPA PLL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 287 | LKQEFMKKRK |
2 | 284 | 288 | KKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006449808.1 | 0.0 | homeobox protein SHOOT MERISTEMLESS isoform X2 | ||||
Swissprot | P46608 | 1e-148 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | V4TR83 | 0.0 | V4TR83_9ROSI; Uncharacterized protein | ||||
STRING | XP_006449809.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-126 | KNOX/ELK homeobox transcription factor |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10015591m |
Entrez Gene | 18050945 |
Publications ? help Back to Top | |||
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