PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015541m
Common NameCICLE_v10015541mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 391aa    MW: 44957.5 Da    PI: 4.3837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015541mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.31.6e-35151072103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k ye+++de+++++isw ++++sfv++d +ef+ ++Lp+yFkhsnf+SF+RQLn+YgF+k+++++         weF+++ F +++k+ll+
  Ciclev10015541m  15 FLNKCYEMVDDESTDSIISWGQSNESFVIWDVTEFSVQLLPRYFKHSNFSSFIRQLNIYGFRKIDTDR---------WEFANDGFVRDQKHLLN 99 
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i r+k++
  Ciclev10015541m 100 NICRRKNT 107
                      *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.4E-37798IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5611104IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.40.50.3005.4E-4143197IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVKSNDDGSN SVAPFLNKCY EMVDDESTDS IISWGQSNES FVIWDVTEFS VQLLPRYFKH  60
SNFSSFIRQL NIYGFRKIDT DRWEFANDGF VRDQKHLLNN ICRRKNTQGS EQRKSLQQSE  120
KLVEPCEKID HSALWKEVEN LKAGKNALTQ ELLKLRQYQE TADNKLVLLR DRVQGMEKSQ  180
QQMLSFLVMA MQNPSFLVQL LQPKENNWRM AEAGTMLEEV TEVGEPIASD NMLVRYHPPI  240
DETPKPVLKP VTDSGNQMAS DTSDGMKDVF MNIDFLKMLM DENQAPFIPL DLHNDGEWEK  300
LLLANPILDN SEDTQVDKDK EVDKEGHTDV DMEAEPAVSG SELERLNNLE LLLQELDKSQ  360
NFDNELENAR HLEFLTQKIE LLASESNYKL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-22210416129Heat shock factor protein 1
5d5v_B1e-22210416129Heat shock factor protein 1
5d5v_D1e-22210416129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448139.10.0heat stress transcription factor A-8
SwissprotQ9S7U51e-119HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLV4W5N30.0V4W5N3_9ROSI; Uncharacterized protein
STRINGXP_006448138.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-116heat shock transcription factor A8