PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015528m
Common NameCICLE_v10015528mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GeBP
Protein Properties Length: 394aa    MW: 43455.4 Da    PI: 5.1068
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015528mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573128.33.3e-40163259297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskk 94 
                      lfqrlwse+Deiv+L+G+id+ +k+g +p +d+++fy+++k+s++++vsk qlv+KirrLKkKf+++  k +k+g++ +fsk+h+qk+++lsk+
  Ciclev10015528m 163 LFQRLWSEDDEIVVLKGMIDYSTKKGLDPNQDMQGFYDYIKNSLHVDVSKAQLVDKIRRLKKKFENNLGKgKKKGEDRTFSKPHEQKAYDLSKQ 256
                      79*******************************************************************98899******************** PP

           DUF573  95 iWg 97 
                      +Wg
  Ciclev10015528m 257 FWG 259
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.3E-34164259IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MAPKKPNPME EPPAASSSEE VEEDGDSSGS EEVSSSDGDG EEDAQEPAKT QSPPPQKTHK  60
QSAVKKPEAT PATPQTKSLS SGESESESES ESEPDATPKP IATKPMEETP KVTKPRSKPL  120
SSKRPNETEE SAKDSKRAKK KSPEADPDEE EQKKPGEDTK KQLFQRLWSE DDEIVVLKGM  180
IDYSTKKGLD PNQDMQGFYD YIKNSLHVDV SKAQLVDKIR RLKKKFENNL GKGKKKGEDR  240
TFSKPHEQKA YDLSKQFWGG ESTGGVIESA AKSNGKPKKN QNQKGNSKSL AALKAELTDG  300
AEGDKMEVDN DKGNAVNKTV NLKDKDKVLF DKSLGVAGLE EFVLRDGLDM IEGAKKAELE  360
ERWKELQVAQ LELFLQRNEL IKEQAKLILE AMK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449140.10.0probable transcription factor At1g11510
TrEMBLV4UDY20.0V4UDY2_9ROSI; Uncharacterized protein
STRINGXP_006449140.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.11e-27DNA-binding storekeeper protein-related transcriptional regulator