PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015507m
Common NameCICLE_v10015507mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 398aa    MW: 44220.4 Da    PI: 5.6758
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015507mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.98.6e-32551971128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee..v.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra....... 77 
                      lp G++F+P+d el+ e+L++k+   +      +  +e    i+   +i++++P++Lp  +k++ ++++fF+++ ++yatg+rk+r+       
  Ciclev10015507m  55 LPIGVKFDPSDVELL-EHLAAKCGVGNskphmfI--DEfiPtIEGDqGICYTHPENLP-GAKKDGSSVHFFHRTTNAYATGQRKRRKiqsehsl 144
                      699************.999999876665566432..332222444446**********.55677899*******************85677666 PP

              NAM  78 .tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        ++ +W++tgk+k+v++ +g ++g++k++v+y  +++  k+ k++Wvmh+y+l
  Ciclev10015507m 145 nEEHVRWHKTGKTKPVIE-NGIQKGCRKIMVLYksTKKGTKPDKSNWVMHQYHL 197
                      655899************.99************4434666778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3740216IPR003441NAC domain
PROSITE profilePS5100530.29155216IPR003441NAC domain
PfamPF023653.3E-1356197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSRSWLVNSR AIAKKVRNAA RSSAQLIKDY GANRECPNCH YFIDNSDVSP EWPGLPIGVK  60
FDPSDVELLE HLAAKCGVGN SKPHMFIDEF IPTIEGDQGI CYTHPENLPG AKKDGSSVHF  120
FHRTTNAYAT GQRKRRKIQS EHSLNEEHVR WHKTGKTKPV IENGIQKGCR KIMVLYKSTK  180
KGTKPDKSNW VMHQYHLGTD EDEKDDEYVV SKVFYQQTKQ PEKNVDSPII EVPDNLIPDS  240
SPRTPLTNPP NPPRPGKSMV CDDVADDNTL KSSAQEPLHI AEASHVPQPA VKLEDDQGYI  300
TCLAGESEPQ DIGDPGLDGI YDSLLLCKED ISSKVFSGVN NVSYADIFHN AHHMKGNDSA  360
PCGIADLENL EFDTPPDSHL ADLQFSDESI LGWLDRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446621.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
TrEMBLV4UC790.0V4UC79_9ROSI; Uncharacterized protein
STRINGXP_006446621.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.12e-98NAC domain containing protein 44