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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Ciclev10015354m |
| Common Name | CICLE_v10015354mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
BBR-BPC |
| Protein Properties |
Length: 424aa MW: 47317.8 Da PI: 10.3535 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Ciclev10015354m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 350.1 | 5e-107 | 132 | 423 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssia..erdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdn 79
mddd+ + rn+gyyep+ +k +lglqlms+++ +rd+k+ r+ n+ +++ ++a+++rd m++ +rd+++++ ++
Ciclev10015354m 132 MDDDALNMRNWGYYEPS--FKGHLGLQLMSTMPmvDRDTKPflpgRDPNI-MIGANGAFHPRDcvvseasipMNY-MRDSWISQ--------RD 213
9***9999*******99..************9999***************.************************.9*******........78 PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlse.pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
k+l++l+ + + +vl++t+ ++slq+l+ p+++ + + p +e++ +++e + kkrq + k++kakk+kk
Ciclev10015354m 214 KFLNMLPSNP--------TFGVLPETSGAHSLQMLQPpPNMSRDDRLaPDRVAPDRIVPKVEEPVVKTEGAPLKKRQGGGASKTPKAKKPKK-- 297
9*****9544........5899************66656765444331333344444555566777788888899999999*******9999.. PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265
+k+++ ++ +r+k kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrKmSqgaf
Ciclev10015354m 298 --PKDNNGTAV--QRVKPAKKSMDVVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRKMSQGAF 387
..334444444..689****************************************************************************** PP
GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
kk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
Ciclev10015354m 388 KKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 423
***********************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 424 aa
Download sequence Send
to blast |
MVERHDALTP MPTILTTKPM RNSKSIYNLS ELIHNLSYTN KFKFVFTLLL ENIKAPIYSI 60
SFKAFEFQSS KIHIFRSLSF SFFLTLSPLS FSFLGLFLSP LSSLSQSQRF LSPLSSEGQN 120
PKEPFTTPQL FMDDDALNMR NWGYYEPSFK GHLGLQLMST MPMVDRDTKP FLPGRDPNIM 180
IGANGAFHPR DCVVSEASIP MNYMRDSWIS QRDKFLNMLP SNPTFGVLPE TSGAHSLQML 240
QPPPNMSRDD RLAPDRVAPD RIVPKVEEPV VKTEGAPLKK RQGGGASKTP KAKKPKKPKD 300
NNGTAVQRVK PAKKSMDVVI NGIDMDISGI PIPVCSCTGA PQQCYRWGCG GWQSACCTTN 360
VSMYPLPMST KRRGARIAGR KMSQGAFKKV LEKLAAEGYN FANPIDLRTH WARHGTNKFV 420
TIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
