PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015314m
Common NameCICLE_v10015314mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 430aa    MW: 48249.5 Da    PI: 7.4183
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015314mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.62.4e-09150172426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      + C+ ++r+G C+ Gd C FaHg
  Ciclev10015314m 150 AVCSEYRRGGGCSLGDDCEFAHG 172
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.07E-5145176IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4146173IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.066147174IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5150174IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-7150172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-4179210IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484182206IPR000571Zinc finger, CCCH-type
SMARTSM003561.6182205IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MSSAADQQHK LLSPKSNGAK LLFKDIEVPP RKLLLQNKKS HHHHHHHHHH QDICSGSPRS  60
GSGSDSASYL FYPDQQEMNI LHNKFLPFNN TDADSDPDSD PYASDHFRMY EFKIRRCTRS  120
RSHDWTDCPF AHPSEKARRR DPRRYHYSGA VCSEYRRGGG CSLGDDCEFA HGVFECWLHP  180
SRYRTEACKD GKNCKRKVCF FAHSPRQLRI LPEISSQYSS SPSSVNNNNQ KISSHCCMYC  240
HHHSVNSSPT STLLGNMSHL SRSPSLSPPL SPVKHGLISP ISRYSATTPV PADRLSKFSN  300
SSEMSMSYKD VLNELMTSMD AISFNEVSSP MSLTPSNDVN ACPWIDVSSF NVEDQQQFVL  360
SPSTPSPSAG SIMNPVAAHH DYFSNKSFLD DDQKMINYHN HIHNNSNGSC QLASDTPDPD  420
LGWVNELLT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447247.10.0zinc finger CCCH domain-containing protein 2
RefseqXP_006469930.10.0zinc finger CCCH domain-containing protein 2
TrEMBLV4U3J20.0V4U3J2_9ROSI; Uncharacterized protein
STRINGXP_006469930.10.0(Citrus sinensis)
STRINGXP_006447247.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-76C3H family protein