PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10015297m

Common Name

CICLE_v10015598mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 434aa MW: 49222.5 Da PI: 9.7437

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10015297m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4.2e-07	7	30	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt++C +++ G C++ ++C+FaHg Ciclev10015297m 7 YKTRICVLYQK-GRCSR-PTCSFAHG 30 9********.*.*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.9E-9	5	37	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.502	6	32	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MFERKFYKTR ICVLYQKGRC SRPTCSFAHG DAELRRPFRS HHGGPDYRVG DLRDKLDRRL 60 SPQKIYSPGR DTRGRNRFRG LSPSRSPENK SDRKRWKKQH LDGPREFSAS LKISDGINDR 120 VKERKFTPSD SKVVLLEQLK EVQLDINVLE DRKLQLETNE EEKGQEADIL SSRIKELETQ 180 LQKEKEESKR IASKIKKFVK AHNRHSQMQD DLKRSQARLQ KLGYHLGLDA TKVGGNEEDS 240 SINIMSDEET TNYHLVDPQN DKQTIPSPNK KKLHVDRDTT NGFVPEANLT KDGGRVAESV 300 HLKEVSWWNQ HPTNHGSVAD ESKLKGKNVS TSWFSAQAKN VRSANALALP STGIAAHVND 360 EEIEVEVEQI EEIDMASAGT GKGATYMAKG LQFRLPPPLP IPRNAYIEVS LLGIAYWIYS 420 ICPHLCVHNS KSP*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MFERKFYKTR ICVLYQKGRC SRPTCSFAHG DAELRRPFRS HHGGPDYRVG DLRDKLDRRL  60
SPQKIYSPGR DTRGRNRFRG LSPSRSPENK SDRKRWKKQH LDGPREFSAS LKISDGINDR  120
VKERKFTPSD SKVVLLEQLK EVQLDINVLE DRKLQLETNE EEKGQEADIL SSRIKELETQ  180
LQKEKEESKR IASKIKKFVK AHNRHSQMQD DLKRSQARLQ KLGYHLGLDA TKVGGNEEDS  240
SINIMSDEET TNYHLVDPQN DKQTIPSPNK KKLHVDRDTT NGFVPEANLT KDGGRVAESV  300
HLKEVSWWNQ HPTNHGSVAD ESKLKGKNVS TSWFSAQAKN VRSANALALP STGIAAHVND  360
EEIEVEVEQI EEIDMASAGT GKGATYMAKG LQFRLPPPLP IPRNAYIEVS LLGIAYWIYS  420
ICPHLCVHNS KSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447506.1	0.0	zinc finger CCCH domain-containing protein 13
Refseq	XP_006469713.1	0.0	zinc finger CCCH domain-containing protein 13 isoform X1
TrEMBL	V4TJZ2	0.0	V4TJZ2_9ROSI; Uncharacterized protein
STRING	XP_006447504.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10069	21	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	3e-50	C3H family protein

Link Out ? help Back to Top
Phytozome	Ciclev10015297m
Entrez Gene	18053170