PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10015219m | ||||||||
Common Name | CICLE_v10015219mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 451aa MW: 50451.8 Da PI: 5.8078 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 467.6 | 7e-143 | 49 | 446 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lLl+cA++v++g+le+a+ +L ++s+laspdgd+mqR+aayfteALa+r+++s+++l kal++++ s ++see+ ++klf++++P+lk++ Ciclev10015219m 49 LIHLLLSCANHVANGSLENANLALDQISQLASPDGDTMQRIAAYFTEALAQRILKSWPGLHKALNSTRIS--SVSEEMLVRKLFFDMFPFLKVA 140 689*************************************************************999987..59******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188 ++++NqaI ea+ege+ vH+iD+++ +++QW+aL+qaL++Rpegpp+lRiTg+++ +ke l ++++rL++ Ae+l++pf+fn v+++le+ Ciclev10015219m 141 FVLTNQAIIEAMEGEKVVHVIDLNAAEPAQWIALIQALSTRPEGPPHLRITGIHP----QKEVLDQMAHRLTEEAEKLDIPFQFNS-VVSKLEN 229 *******************************************************....9**************************.799**** PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrll....................................desvsleserdevLklvkslsPkvvvvveqea 246 l++++Lrvk+gEala+++vlqlh+ll + + + d++L+ +++lsPk++vv+eq++ Ciclev10015219m 230 LDFDKLRVKTGEALAISSVLQLHSLLaaddyaslialknsllangygysqspdsvsssplspN----ASAKMDSFLNSLWGLSPKIMVVTEQDS 319 ******************************************************997653222....2225788******************** PP GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340 +hn+ +++er+leal+ y+alfd+le++++r+s er kvE++l+g+ei+n++aceg+er+erhe+lekW +r++ a F++vpls+ + qa++l Ciclev10015219m 320 NHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLQARRL 413 ********************************************************************************************** PP GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 l+ ++ dgyr+ e++ +++++W+drpL+svSaW Ciclev10015219m 414 LQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 446 ********************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 58.572 | 23 | 427 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-140 | 49 | 446 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MVPMFQDDGS SSVTSSSSPL QFFSTMSPSL GSPYQWLREL KSEERGLYLI HLLLSCANHV 60 ANGSLENANL ALDQISQLAS PDGDTMQRIA AYFTEALAQR ILKSWPGLHK ALNSTRISSV 120 SEEMLVRKLF FDMFPFLKVA FVLTNQAIIE AMEGEKVVHV IDLNAAEPAQ WIALIQALST 180 RPEGPPHLRI TGIHPQKEVL DQMAHRLTEE AEKLDIPFQF NSVVSKLENL DFDKLRVKTG 240 EALAISSVLQ LHSLLAADDY ASLIALKNSL LANGYGYSQS PDSVSSSPLS PNASAKMDSF 300 LNSLWGLSPK IMVVTEQDSN HNGLTLMERL LEALYSYAAL FDCLESSVSR TSMERLKVEK 360 MLFGEEIKNI IACEGFERKE RHEKLEKWIQ RFDLACFGNV PLSYCGMLQA RRLLQSYNCD 420 GYRIAEDNRC VLICWHDRPL FSVSAWSCRK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-68 | 32 | 449 | 1 | 380 | Protein SCARECROW |
5b3h_D | 3e-68 | 32 | 449 | 1 | 380 | Protein SCARECROW |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006470721.1 | 0.0 | scarecrow-like protein 3 isoform X1 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | V4W0V1 | 0.0 | V4W0V1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006446239.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4098 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10015219m |
Entrez Gene | 18050540 |
Publications ? help Back to Top | |||
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