PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015215m
Common NameCICLE_v10015215mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 452aa    MW: 48782.4 Da    PI: 8.0264
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015215mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-104873126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C f++rtG C yG++C+F+H+
  Ciclev10015215m 48 PGEPDCLFYRRTGLCGYGSNCRFNHP 73
                     5789*********************8 PP
2zf-CCCH37.34.6e-1291116227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C ++++tGtCkyG++Ck++H++
  Ciclev10015215m  91 GQPDCGYYLKTGTCKYGSTCKYHHPK 116
                      5799********************96 PP
3zf-CCCH38.32.2e-12138161427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      + C++++rtG Ck+G  CkF+H++
  Ciclev10015215m 138 KSCPYYMRTGSCKFGVACKFHHPQ 161
                      66********************97 PP
4zf-CCCH41.81.8e-13285310227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ Cr+++ tGtCkyG+ CkF+H++
  Ciclev10015215m 285 DQPDCRYYMNTGTCKYGADCKFHHPK 310
                      6899********************96 PP
5zf-CCCH34.53.3e-11330355126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +++++C++++ +G+Ck+G++C+F H+
  Ciclev10015215m 330 PGQAICSNYSMYGICKFGPTCRFDHP 355
                      5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8964775IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-54774IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-55274IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-45372IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.95389117IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-991116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352134162IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5136161IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-5139160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.455283311IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6283310IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-10285310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-7287312IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6289310IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6329355IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6329356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911329357IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8331355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MPDNRQVKSN AVANQSADNI EEAIWRLKIH DNQEGGGVAQ ASPYPARPGE PDCLFYRRTG  60
LCGYGSNCRF NHPAYAAQGA QYREELPERN GQPDCGYYLK TGTCKYGSTC KYHHPKDRNG  120
AGPVSFNILG LPMRQDEKSC PYYMRTGSCK FGVACKFHHP QPSSLGTALP LTGNASLGSM  180
GSSVLPSSGL QYAGSLPTWS LQRAPYLSSR LQGTQSYMPL IVSPSQGIVP APGWNTYMGN  240
IGPLSPTSIA GSNLIYSSRN QGDLGAGAQM HILSASSQNL PERPDQPDCR YYMNTGTCKY  300
GADCKFHHPK ERIAQSAASN IGPLGLPSRP GQAICSNYSM YGICKFGPTC RFDHPYAGYP  360
INYGLSLPPL SILDSSLMNH QAISATHSIE TSPDASSKIP NWVQNSDAVS VQHQNPDMKN  420
STTKNSDDSS KVDHPPHSVP NCSEPPHDQS N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447662.10.0zinc finger CCCH domain-containing protein 3
RefseqXP_006469597.10.0zinc finger CCCH domain-containing protein 3
TrEMBLA0A067F8M60.0A0A067F8M6_CITSI; Uncharacterized protein
TrEMBLA0A2H5PS580.0A0A2H5PS58_CITUN; Uncharacterized protein
TrEMBLV4U4N80.0V4U4N8_9ROSI; Uncharacterized protein
STRINGXP_006469597.10.0(Citrus sinensis)
STRINGXP_006447662.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-129C3H family protein