PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014986m
Common NameCICLE_v10014986mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TCP
Protein Properties Length: 500aa    MW: 54656.5 Da    PI: 7.7342
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014986mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.1e-35942542135
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa.se 72 
                       g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  +i el+++                      +   +  +
  Ciclev10014986m  94 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGVDQPSKAVEWLIKAAADSIAELPSLnstfpdtpkqlsdekrasegtdQ---QgFD 184
                      689*************************************************************87776555555444433332110...1211 PP

              TCP  73 c...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmriknk 135
                      +   + + +++ ++n+s++++ +++a+s++s++s+ s l+l++      r kar+rarer ++++ +k++
  Ciclev10014986m 185 SvelDGDPNNNYQQNQSQHRSLSKSACSSNSETSKGSGLSLSRselrVNRDKARERARERAAKEKDQKEN 254
                      12322222233333444447778888888889998888999887344455*********66665555543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-4195251IPR005333Transcription factor, TCP
PROSITE profilePS5136930.67196154IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.839231249IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MEVEEIQSQT QACKLSRIGN GRLDSTKMSH KDQYPDDEED GEQQQLQLIK RASANDSGGA  60
LGVNNTAAAA GCGGGNRLRG WHHSSRIIRV SRASGGKDRH SKVWTSKGLR DRRVRLSVTT  120
AIQFYDLQDR LGVDQPSKAV EWLIKAAADS IAELPSLNST FPDTPKQLSD EKRASEGTDQ  180
QGFDSVELDG DPNNNYQQNQ SQHRSLSKSA CSSNSETSKG SGLSLSRSEL RVNRDKARER  240
ARERAAKEKD QKENESQINA NRHHHHNVNP ISQSSSFTEL LTGGIGGSVN NNNNTSPTTA  300
SSQQQNEEPN FFHKATTAAV RPWPAAPMDY FNSGLLGPSS SRPPHHHHLS GQIQLGSSNS  360
LPQAMQIPPF SVTNENHHQE MQHFSFVHDH LIPVTATQPG PGGGDYFTIS SSLGFNRGTL  420
QSNSSPSVFP HIQRFGSSSP IDGSNVNVPF LIGTAPAVEN HNHHHHHHQF PPGFDGRLHL  480
YYGDGSRHSD SNQKDKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-23101155155Putative transcription factor PCF6
5zkt_B9e-23101155155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.225430.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045831.10.0transcription factor TCP2
RefseqXP_024045832.10.0transcription factor TCP2
RefseqXP_024045833.10.0transcription factor TCP2
TrEMBLV4W7U20.0V4W7U2_9ROSI; Uncharacterized protein
STRINGXP_006449018.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.23e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2