PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014527m
Common NameCICLE_v10014527mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 664aa    MW: 71705.5 Da    PI: 5.7866
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014527mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.53e-28220273155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Ciclev10014527m 220 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 273
                      79*******************.********************************8 PP
2Response_reg79.11.5e-26361441109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl+vdD+ + +++l+q+l++  y +v++++++  al++l+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a g  + + + ++ 
  Ciclev10014527m  36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALNILRERKgcFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADGRVSAVMRGIRH 127
                      89*********************.*******************************************6654.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel +
  Ciclev10014527m 128 GACDYLIKPIREEELKN 144
                      **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23007.3E-4233168No hitNo description
SuperFamilySSF521721.37E-3633162IPR011006CheY-like superfamily
SMARTSM004482.6E-3134146IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.0935150IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2336144IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.55E-2837149No hitNo description
PROSITE profilePS5129410.655217276IPR017930Myb domain
SuperFamilySSF466891.43E-19217277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-29218278IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-24220273IPR006447Myb domain, plants
PfamPF002499.5E-7222271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV  60
TTCSQAAVAL NILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI MMSADGRVSA  120
VMRGIRHGAC DYLIKPIREE ELKNIWQHVV RKRWNENKEH ENSGSLEETD HHKRGSDEIE  180
YASSVNEGTE GTFKAQRKRI SAKEEDDGEL ESDDPSTTKK PRVVWSVELH QQFVSAVNQL  240
GIDKAVPKRI LELMNVPGLT RENVASHLQK FRLYLKRLNG VSQQGGITNS FCAPIETNVK  300
LGSLGRFDIQ ALAASGQIPP QTLAALHAEL LGRPTGNLVT AVDQPALLQA TLQGPKCIPA  360
DHGVAFGQQL VKCQSNVPEN LPQSIISVDD ASTGFGVWAS NSLGAVASTS NLGGLNPQNG  420
NMLMDILHQQ QQKQQNQQSQ QQSTLSETSR SISVQPSCLV VPSRSSASFQ AGNSPASVNQ  480
SCSFNRGAVV DYSLLSSQSN NSSLNMGQIS DGDIKTTGVI TGYLAPGSLS PSASSCSVTA  540
DNTSSQQVQN SNIAFRAARQ VPGLVSNVGD IQGSYGAKSG EVFDLGSLRN HGFMGKGNCI  600
PSRLAVDEFE SPMNNLNYGN IYLDNNANKV KEEPNLEFVD NAKVGIPMYQ QYAPNDLMSV  660
FTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22216279164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448148.10.0two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-168ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-168ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLV4U6200.0V4U620_9ROSI; Two-component response regulator
STRINGXP_006448147.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-125response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]