PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014425m
Common NameCICLE_v10014424mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 719aa    MW: 79193.8 Da    PI: 5.8898
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014425mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox628.8e-2059114156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Ciclev10014425m  59 RKRYHRHTQRQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 114
                      789999***********************************************998 PP
2START227.53.8e-712444561206
                      HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
            START   1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                      ela +a++e++++a+a++p+W+  +  +n+de+l++f+++ +    ++ea+r+s+vv+m++++lve+l+d++ qW+  +     +a+t+ev+s+
  Ciclev10014425m 244 ELAVAAMEEFLRMAQAGDPLWTDQV--LNEDEYLRTFPRGIGplaLRSEASRESTVVIMNHVNLVEILMDVN-QWSSVFCgivsRAMTIEVLST 334
                      57899********************..************999******************************.******99999********** PP

                      T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS
            START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174
                      g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+d+ ++ p    + +++++pSg+li++++ng+skv+wvehv++++
  Ciclev10014425m 335 GvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGTWAVVDVSLDNLRPSP----ISKCRRRPSGCLIQELPNGYSKVIWVEHVEVDD 424
                      *******************************************************99....689999*************************** PP

                      SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 175 rlphwllrslvksglaegaktwvatlqrqcek 206
                      r++h+++++lv+sgla+gak+wvatl+rqce+
  Ciclev10014425m 425 RSVHNIYKPLVNSGLAFGAKRWVATLDRQCER 456
                      ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-2239114IPR009057Homeodomain-like
SuperFamilySSF466894.01E-1945116IPR009057Homeodomain-like
PROSITE profilePS5007116.79556116IPR001356Homeobox domain
SMARTSM003895.9E-1957120IPR001356Homeobox domain
CDDcd000866.70E-1958117No hitNo description
PfamPF000462.1E-1759114IPR001356Homeobox domain
PROSITE patternPS00027091114IPR017970Homeobox, conserved site
PROSITE profilePS5084845.015235459IPR002913START domain
SuperFamilySSF559617.94E-38237458No hitNo description
CDDcd088751.13E-122239455No hitNo description
SMARTSM002341.0E-70244456IPR002913START domain
PfamPF018523.1E-60245456IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-6332456IPR023393START-like domain
SuperFamilySSF559614.4E-27476707No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 719 aa     Download sequence    Send to blast
MFQPNTFESH HMFDMTRRSS ESDLGKLKED DYETKSGTET TEMEAPSGDD QDPSQHPKRK  60
RYHRHTQRQI QEMEAFFKEC PHPDDKQRKE LSRELGLEPL QVKFWFQNKR TQMKAQHERH  120
ENQILKAENE KLRAENNRYK EALGNATCPN CGGPAALGEM SFDEQHLRIE NARLREEIDR  180
ISGIAAKYVG KPLSSFPHLT PRSLDLGFTN LGTQSGFVGE MYGGCDLIRS ISGPSEADKP  240
MIVELAVAAM EEFLRMAQAG DPLWTDQVLN EDEYLRTFPR GIGPLALRSE ASRESTVVIM  300
NHVNLVEILM DVNQWSSVFC GIVSRAMTIE VLSTGVAGNY NGALQVMTAE FQVPSPLVPT  360
RENYFVRYCK QHSDGTWAVV DVSLDNLRPS PISKCRRRPS GCLIQELPNG YSKVIWVEHV  420
EVDDRSVHNI YKPLVNSGLA FGAKRWVATL DRQCERLASS MANNIPAGDL CVITSPEGRK  480
SMLKLAERMV TSFCTGVGAS TAHAWTTLSA TGSDDVRVMT RKSMDDPGRP PGIVLSAATS  540
FWIPVPPRRI FDFLRDENSR SEWDILSNGG LVQEMAHIAN GRDPGNCVSL LRVNSANSSQ  600
SNMLVLQESC TDSTGSYVIY APVDIVAMNM VLSGGDPDYV ALLPSGFAIL PDGPGLNGGG  660
ILEVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNSLIK CTVERIKAAV MTDNASCR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449076.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_006449077.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_024047316.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_024047317.10.0homeobox-leucine zipper protein MERISTEM L1
RefseqXP_024047318.10.0homeobox-leucine zipper protein MERISTEM L1
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLV4UJ300.0V4UJ30_9ROSI; Uncharacterized protein
STRINGXP_006449076.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]