PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10014297m | ||||||||
Common Name | CICLE_v10014295mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 818aa MW: 94378.7 Da PI: 6.5718 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.8 | 3.7e-23 | 140 | 226 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r +++++ + r++r+etrtgC a++++ ++ +g ++vt++e++HnHe++ Ciclev10014297m 140 CYSRYAVLEGFSIRKDFVNKSRINGVVVSRRYTCYRQGYRPTKHSA--NLRKPRQETRTGCLAHMTIARQPNGMFQVTHFETKHNHEFV 226 7****************************************99988..99*************************************97 PP | |||||||
2 | FAR1 | 87 | 2.7e-27 | 274 | 362 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA ++GFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+++etr+gC a+l+v+++ dgk++vt++e++HnHel+ Ciclev10014297m 274 EYYNAYAGRLGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVKRSQKETRIGCLAQLVVSRQADGKYRVTHFEEKHNHELV 362 69******************************************999.899999**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.0E-21 | 140 | 226 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.5E-24 | 274 | 362 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 7.2E-27 | 482 | 576 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.52 | 762 | 798 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0079 | 773 | 800 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 818 aa Download sequence Send to blast |
MDSCEADMSS QLPEEDGKNE LQMSLRMDVD EGQGRENSKD SSVGKSSEST NTECNCQSPS 60 ASSINKSLME IHGEEYQTLG ISSAYKCETE VVDGEGESHT SEVSSSDVFG GGVVVKDEEV 120 TYVIPTVGME FETEDHAYKC YSRYAVLEGF SIRKDFVNKS RINGVVVSRR YTCYRQGYRP 180 TKHSANLRKP RQETRTGCLA HMTIARQPNG MFQVTHFETK HNHEFVTQST AYMLPSQKRL 240 SFAQAVEADL SNSSRMDGIP KLGMGFDSED HAYEYYNAYA GRLGFSVRKD YVNRSKIDGA 300 VASRRFTCFR EGFRQKDKRD LNVKRSQKET RIGCLAQLVV SRQADGKYRV THFEEKHNHE 360 LVAACRVPML RSQKRLAGSQ VVEGNVQDVS ENQPKSTSEL SQNLAGNELG YNPIDYKSKL 420 SSKRTREMKE GEVERIQQYF KSKQLKNPSF IYTMQLDAED QITNIFWADA KMLVDYSDFG 480 DVVFFDTTYK LIKDGRPFCP FVGMNHHKQM VIFGASLLYD DSAESFKWLF RTFIEVMSGK 540 KPKTILTDQD AVLVEAIDLA LPEMDHRICV WHVYQKVLKQ FNHLFVGSDS FVNDLFSCIF 600 DHEEEEDFIK AWKVMLDAYG LWENEWLNEI FKDREEWAIA YRKNIFCADI RTVHLREYFT 660 CNLRKHLRSD SDVISFFKHL GKMVNDWHYK ELEANYNMSQ HMPRLIGDVI LLKHARGIYT 720 PNIFELFQQE YEASLNIVVN QCTENGSLFE YKVSIYGQLR EYAVTYNLFD ETVMCNCMKY 780 EFMGVLCSHA LKVLDYRNIK LLPSHCILKR WTRDARV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006469958.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
Refseq | XP_024046859.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | V4U8H4 | 0.0 | V4U8H4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006469958.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447184.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-120 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10014297m |
Entrez Gene | 18053603 |