PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10014295m

Common Name

CICLE_v10014295mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 818aa MW: 94378.7 Da PI: 6.5718

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10014295m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.7e-23	140	226	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r +++++ + r++r+etrtgC a++++ ++ +g ++vt++e++HnHe++ Ciclev10014295m 140 CYSRYAVLEGFSIRKDFVNKSRINGVVVSRRYTCYRQGYRPTKHSA--NLRKPRQETRTGCLAHMTIARQPNGMFQVTHFETKHNHEFV 226 7**************************************99988..99***********************************97 PP
2	FAR1	87	2.7e-27	274	362	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA ++GFsvrk++ ++sk +g + +r+f+C +eg+r+++k++ + +r+++etr+gC a+l+v+++ dgk++vt++e++HnHel+ Ciclev10014295m 274 EYYNAYAGRLGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRD-LNVKRSQKETRIGCLAQLVVSRQADGKYRVTHFEEKHNHELV 362 69****************************************999.899999********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.0E-21	140	226	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.5E-24	274	362	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	7.2E-27	482	576	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.52	762	798	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0079	773	800	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MDSCEADMSS QLPEEDGKNE LQMSLRMDVD EGQGRENSKD SSVGKSSEST NTECNCQSPS 60 ASSINKSLME IHGEEYQTLG ISSAYKCETE VVDGEGESHT SEVSSSDVFG GGVVVKDEEV 120 TYVIPTVGME FETEDHAYKC YSRYAVLEGF SIRKDFVNKS RINGVVVSRR YTCYRQGYRP 180 TKHSANLRKP RQETRTGCLA HMTIARQPNG MFQVTHFETK HNHEFVTQST AYMLPSQKRL 240 SFAQAVEADL SNSSRMDGIP KLGMGFDSED HAYEYYNAYA GRLGFSVRKD YVNRSKIDGA 300 VASRRFTCFR EGFRQKDKRD LNVKRSQKET RIGCLAQLVV SRQADGKYRV THFEEKHNHE 360 LVAACRVPML RSQKRLAGSQ VVEGNVQDVS ENQPKSTSEL SQNLAGNELG YNPIDYKSKL 420 SSKRTREMKE GEVERIQQYF KSKQLKNPSF IYTMQLDAED QITNIFWADA KMLVDYSDFG 480 DVVFFDTTYK LIKDGRPFCP FVGMNHHKQM VIFGASLLYD DSAESFKWLF RTFIEVMSGK 540 KPKTILTDQD AVLVEAIDLA LPEMDHRICV WHVYQKVLKQ FNHLFVGSDS FVNDLFSCIF 600 DHEEEEDFIK AWKVMLDAYG LWENEWLNEI FKDREEWAIA YRKNIFCADI RTVHLREYFT 660 CNLRKHLRSD SDVISFFKHL GKMVNDWHYK ELEANYNMSQ HMPRLIGDVI LLKHARGIYT 720 PNIFELFQQE YEASLNIVVN QCTENGSLFE YKVSIYGQLR EYAVTYNLFD ETVMCNCMKY 780 EFMGVLCSHA LKVLDYRNIK LLPSHCILKR WTRDARV*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MDSCEADMSS QLPEEDGKNE LQMSLRMDVD EGQGRENSKD SSVGKSSEST NTECNCQSPS  60
ASSINKSLME IHGEEYQTLG ISSAYKCETE VVDGEGESHT SEVSSSDVFG GGVVVKDEEV  120
TYVIPTVGME FETEDHAYKC YSRYAVLEGF SIRKDFVNKS RINGVVVSRR YTCYRQGYRP  180
TKHSANLRKP RQETRTGCLA HMTIARQPNG MFQVTHFETK HNHEFVTQST AYMLPSQKRL  240
SFAQAVEADL SNSSRMDGIP KLGMGFDSED HAYEYYNAYA GRLGFSVRKD YVNRSKIDGA  300
VASRRFTCFR EGFRQKDKRD LNVKRSQKET RIGCLAQLVV SRQADGKYRV THFEEKHNHE  360
LVAACRVPML RSQKRLAGSQ VVEGNVQDVS ENQPKSTSEL SQNLAGNELG YNPIDYKSKL  420
SSKRTREMKE GEVERIQQYF KSKQLKNPSF IYTMQLDAED QITNIFWADA KMLVDYSDFG  480
DVVFFDTTYK LIKDGRPFCP FVGMNHHKQM VIFGASLLYD DSAESFKWLF RTFIEVMSGK  540
KPKTILTDQD AVLVEAIDLA LPEMDHRICV WHVYQKVLKQ FNHLFVGSDS FVNDLFSCIF  600
DHEEEEDFIK AWKVMLDAYG LWENEWLNEI FKDREEWAIA YRKNIFCADI RTVHLREYFT  660
CNLRKHLRSD SDVISFFKHL GKMVNDWHYK ELEANYNMSQ HMPRLIGDVI LLKHARGIYT  720
PNIFELFQQE YEASLNIVVN QCTENGSLFE YKVSIYGQLR EYAVTYNLFD ETVMCNCMKY  780
EFMGVLCSHA LKVLDYRNIK LLPSHCILKR WTRDARV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006469958.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Refseq	XP_024046859.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4U8H4	0.0	V4U8H4_9ROSI; Uncharacterized protein
STRING	XP_006469958.1	0.0	(Citrus sinensis)
STRING	XP_006447184.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-120	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10014295m
Entrez Gene	18053603