PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10014266m
Common NameCICLE_v10014266mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91370.3 Da    PI: 6.3311
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10014266mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18563357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Ciclev10014266m  5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                     6789*****************************************************97 PP
2START170.31.2e-531543612204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++   +e+l+d + W ++++  ++l vi +g  g+++l
  Ciclev10014266m 154 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPT-KIAEILKDCPSWFRDCRCLDVLSVIPTGngGTIEL 246
                      6899******************************************************.8999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                      ++++++a+++l++ Rdf+ +Ry+ +l++g++v++++S++s +  p+    ss+vRae+l Sg+li+p+++g+s +++v+hvdl++++++++lr+
  Ciclev10014266m 247 IYMQTYAPTTLAAaRDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTgppPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPEVLRP 340
                      ****************************************99999888899******************************************* PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+ + ++k+++a++++ +
  Ciclev10014266m 341 LYESSKILAQKMTMAAMRHIR 361
                      ****************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.71164IPR001356Homeobox domain
SMARTSM003894.4E-15268IPR001356Homeobox domain
CDDcd000862.92E-16565No hitNo description
SuperFamilySSF466891.88E-16567IPR009057Homeodomain-like
PfamPF000464.3E-16563IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-18763IPR009057Homeodomain-like
CDDcd146862.34E-65796No hitNo description
PROSITE profilePS5084825.265144372IPR002913START domain
CDDcd088751.27E-69148364No hitNo description
SMARTSM002345.4E-49153363IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-20153358IPR023393START-like domain
SuperFamilySSF559614.81E-37154365No hitNo description
PfamPF018525.3E-51154361IPR002913START domain
SuperFamilySSF559614.67E-5401485No hitNo description
SuperFamilySSF559614.67E-5513595No hitNo description
PfamPF086702.6E-50691835IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSHLVY ENGYMRQQLH SAPATTTDNS  120
CESVVMSGQH QQQQNPTPQH PQRDASNPAG LLAVAEETLA EFLSKATGTA VDWVQMIGMK  180
PGPDSIGIVA VSRNCSGVAA RACGLVSLDP TKIAEILKDC PSWFRDCRCL DVLSVIPTGN  240
GGTIELIYMQ TYAPTTLAAA RDFWLLRYST SLEDGSLVVC ERSLTSSTGG PTGPPPSSFV  300
RAEMLASGFL IRPCEGGGSI IHIVDHVDLD AWSVPEVLRP LYESSKILAQ KMTMAAMRHI  360
RQIAQETSGE IQYGGGRQPA VLRTFSQRLS RGFNDAINGF LDDGWSLLSS DGGEDVTIAI  420
NSSPNKFLGS QYNWSMLPAF GGVLCAKASM LLQNVPPALL VRFLREHRSE WADYGVDAYS  480
AACLKASPYA VPCARPGGFP SSHVILPLAH TVEHEEFLEV VRLEGHAFSP EDVALARDMY  540
LLQLCSGIDE NTVGACAQLV FAPIDESFAD DAPLLASGFR VIPLDSKAAM QQDGPAASRT  600
LDLASALEVG SGGARPAGGT ELSNYNSRSV LTIAFQFTFE NHMRDNVAAM ARQYVRSVVG  660
SVQRVAMAIS PSRLGPHAGP KALPGSPEAL TLARWISRSY RVHAGGELLR ADSLTGDALL  720
KQLWHHSDAI MCCSLKTNAS PVFTFANQAG LDMLETTLVA LQDIMLDKIL DEAGRKILCS  780
EFAKIMQQGF AYLPGGMCVS SMGRAVSYEQ AVAWKVLDDD DSNHCLAFMF MNWSFV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448915.20.0homeobox-leucine zipper protein ATHB-14 isoform X1
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A2H5N2040.0A0A2H5N204_CITUN; Uncharacterized protein
STRINGXP_006448915.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]