PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10014094m

Common Name

CICLE_v10014094mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1128aa MW: 126877 Da PI: 7.312

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10014094m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	16.3	1.6e-05	2	27	31	56
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 e LA+ l+Lt +qV++WF +R ++k Ciclev10014094m 2 EGLAAALDLTYKQVRTWFIEKRRRDK 27 679*******************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	7.06E-4	1	27	No hit	No description
PROSITE profile	PS50071	9.977	1	29	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.1E-5	2	27	IPR009057	Homeodomain-like
SMART	SM00571	1.5E-10	346	405	IPR018501	DDT domain
PROSITE profile	PS50827	12.009	346	405	IPR018501	DDT domain
Pfam	PF02791	5.2E-11	347	402	IPR018501	DDT domain
Pfam	PF15612	3.4E-6	629	666	IPR028942	WHIM1 domain
Pfam	PF15613	5.7E-10	759	832	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1128 aa Download sequence Send to blast
MEGLAAALDL TYKQVRTWFI EKRRRDKGDN GIVIPSSSSK KLKGFHGRNR LGVVSAKIVK 60 KQDSLIHNKH LSLMVCNGTG KKKNAVSVLQ DLLTPDYILK KVFRKDGPSL GVEFDSLPSK 120 AFFHSKDSIN SCPPLQENQT AKRKRKVSIH DELDHQECCT NTDHVRKHGM GKGLMTAWRV 180 MNPNGGTVPT GIDVADRQVT VVPQMATPLS QKPPLRKKRA QQIVSLLKQR RLANNLQNKR 240 KPVAKGRQVK LDKGERLRQP NKEKCELAPD SVISQERLDQ IAMLVDDEEL ELRELEVGPN 300 PPTCCDHIST KGLHGCSLCR DLLAKFPPNS VKMKQPFGTQ PWDSSPETVK KLFKVFHFLC 360 TYAGIVDICS FTLDEFAQAF HDKDSMLLGK IHVALLKLLL SDVEMELGRG CPPHLSVSCK 420 FLALLHSVEN QEFFVEFWNK SLNPLTWTEI LRQVLVAAGF GSKQGSSRKE SLSKEMILML 480 KYGLRPGTLK GELFRILLEQ GNNGSKVCQL ARSSQIAELN LESTTEEVEL LISSTLSSDI 540 TLFEKIASST YRLRINTSKE ADDFESDAED IGSVDDNSDD DDTCSNRDDS ECNSENQRQR 600 RPKYLNCRKS ENNMLTVYME IDESHRGDVW LSGLMEGEYS DLTIDEKLNA LVGLIDLVSA 660 GSSIRMEDPT KAIAESVPSV RHYGSGAKIK RALPNQHSLP RPSWVHAGDF HGVRETNTSR 720 ELHPLDSFSL ISKSCGKEKS SSVKDAKATE VSTDLHPMQS IYLGSDRRYN RYWLFLGPCN 780 EYDPGHKRVY FESSEDGHWE VIDTEEALRA LLSVLDDRGR QEALLIESLE KREAFLCQAM 840 SSGLVNNTEI RHVAQSDQSE LDIVREDSSS PVSDVDNNLA LSEIGKESLP SCGAIVLDVG 900 KKGEEQHRMW SRLQEFDAWI WNSFYLNLNA VKHGKRSYLD ALARCERCHD LYWRDEKHCK 960 ICHTTFELDF DLEERYAVHA ATCRGKGDHL VSKHKILSSQ LQSLKAAVHA IESVMPEDAL 1020 VGAWTKSAHK LWVKRLRRTS SLAELLQVVA DFVSAINEGW LYQWNVQIAD TVMEEIIAVF 1080 PTMPQTSSAL ALWLVKLDAI IAPYLERVNS GKEDARMRCR GKQALVQ*

Sequence ? help Back to Top

Protein Sequence Length: 1128 aa Download sequence Send to blast

MEGLAAALDL TYKQVRTWFI EKRRRDKGDN GIVIPSSSSK KLKGFHGRNR LGVVSAKIVK  60
KQDSLIHNKH LSLMVCNGTG KKKNAVSVLQ DLLTPDYILK KVFRKDGPSL GVEFDSLPSK  120
AFFHSKDSIN SCPPLQENQT AKRKRKVSIH DELDHQECCT NTDHVRKHGM GKGLMTAWRV  180
MNPNGGTVPT GIDVADRQVT VVPQMATPLS QKPPLRKKRA QQIVSLLKQR RLANNLQNKR  240
KPVAKGRQVK LDKGERLRQP NKEKCELAPD SVISQERLDQ IAMLVDDEEL ELRELEVGPN  300
PPTCCDHIST KGLHGCSLCR DLLAKFPPNS VKMKQPFGTQ PWDSSPETVK KLFKVFHFLC  360
TYAGIVDICS FTLDEFAQAF HDKDSMLLGK IHVALLKLLL SDVEMELGRG CPPHLSVSCK  420
FLALLHSVEN QEFFVEFWNK SLNPLTWTEI LRQVLVAAGF GSKQGSSRKE SLSKEMILML  480
KYGLRPGTLK GELFRILLEQ GNNGSKVCQL ARSSQIAELN LESTTEEVEL LISSTLSSDI  540
TLFEKIASST YRLRINTSKE ADDFESDAED IGSVDDNSDD DDTCSNRDDS ECNSENQRQR  600
RPKYLNCRKS ENNMLTVYME IDESHRGDVW LSGLMEGEYS DLTIDEKLNA LVGLIDLVSA  660
GSSIRMEDPT KAIAESVPSV RHYGSGAKIK RALPNQHSLP RPSWVHAGDF HGVRETNTSR  720
ELHPLDSFSL ISKSCGKEKS SSVKDAKATE VSTDLHPMQS IYLGSDRRYN RYWLFLGPCN  780
EYDPGHKRVY FESSEDGHWE VIDTEEALRA LLSVLDDRGR QEALLIESLE KREAFLCQAM  840
SSGLVNNTEI RHVAQSDQSE LDIVREDSSS PVSDVDNNLA LSEIGKESLP SCGAIVLDVG  900
KKGEEQHRMW SRLQEFDAWI WNSFYLNLNA VKHGKRSYLD ALARCERCHD LYWRDEKHCK  960
ICHTTFELDF DLEERYAVHA ATCRGKGDHL VSKHKILSSQ LQSLKAAVHA IESVMPEDAL  1020
VGAWTKSAHK LWVKRLRRTS SLAELLQVVA DFVSAINEGW LYQWNVQIAD TVMEEIIAVF  1080
PTMPQTSSAL ALWLVKLDAI IAPYLERVNS GKEDARMRCR GKQALVQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250\|UniProtKB:F4HY56}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004469	1e-51	AP004469.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15D01, TM0004a, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006447893.2	0.0	homeobox-DDT domain protein RLT3 isoform X1
Refseq	XP_024046871.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
Swissprot	F4JRF5	0.0	RLT3_ARATH; Homeobox-DDT domain protein RLT3
TrEMBL	V4TL28	0.0	V4TL28_9ROSI; Uncharacterized protein
STRING	XP_006447893.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9638	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Ciclev10014094m
Entrez Gene	18052511