PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10014022m

Common Name

CICLE_v10014022mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HB-other

Protein Properties

Length: 1734aa MW: 194763 Da PI: 5.464

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10014022m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	21	77	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+ ++ ++yps++ r+eL+++lgL++rq ++WF+ rR k++k Ciclev10014022m 21 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 77 6799***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.0E-17	5	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.14E-15	18	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.536	18	78	IPR001356	Homeobox domain
SMART	SM00389	7.4E-16	20	82	IPR001356	Homeobox domain
CDD	cd00086	5.38E-14	21	77	No hit	No description
Pfam	PF00046	3.1E-16	21	77	IPR001356	Homeobox domain
SMART	SM00571	1.5E-22	529	588	IPR018501	DDT domain
PROSITE profile	PS50827	17.364	529	588	IPR018501	DDT domain
Pfam	PF02791	6.4E-17	531	585	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	711	779	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-7	932	971	IPR028942	WHIM1 domain
Pfam	PF15613	3.5E-12	1113	1183	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1734 aa Download sequence Send to blast
MEAASEAEEK KKKKPLEGEV KTKRKMKTAS QLEILEKTYA VESYPSEALR AELSAQLGLS 60 DRQLQMWFCH RRLKDRKAPT AKRQPKDFQS LVPAGEKELA GSELVRGGMA VQRFYEVPMA 120 PMLPFPLPQR NIAEMRAIAF VESQLGEPLR EDGPILGVEF DSLPPDAFGR PIGPAAMGHQ 180 KHSVRPLEAK EYERLDVKPF KGATRTVHEY KFLPEQPTVR SETHEKAASS YPYGSPADGS 240 TARNSSLRAG HPFMHGSEQI SSGYGFPGQL PNLNLLSHQG RHSHLLPSVS GEYENILQKN 300 SFISAGMDAH VGGQPITAMD NAFISYDRRV SHDEDVSRTE KKRKSEEARI AREVEAHEKR 360 IRKELEKQDI LRRKREEQIR KEMERQDRER RKEEERLLRE KLREEERYLR EQRRELERRE 420 KFLQKESIRA EKRRQKEELR RVKEAERLKV ANERAVARRI AKESMALVED ERLELMELAA 480 SSKGLPTIVS LDFETLQNLD LFRDRLCTFP PKSVQLKRPF AVQPWNDSED NIGNLLMVWR 540 FLITFADVLG LWPFTLDEFV QAFHDYDPRL LGEIHVALLR SVIKDIEDAA KTPFTGLGAN 600 QNSAVNPGGA HPQIVEGAYA WGFDIRSWQL HLNALTWPEI LRQFALSAGF GPQLNKRNIE 660 KMYPHDNNEG NDGENIISNL RNGSAVGNAV AIMHEMGLSN LRRSRHRLTP GTVKFAAFHV 720 LSLEGSEGLT ILEVADKIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRAA 780 YRKDPGDADA ILSAARERIR VFKRGFVDGE EADDAERDEE RDEDSDSDVP EVPDVYDMDT 840 DLNSKEETHE YLEANSCGAK TPLGNREANI KGIESPQGDL GNSGRGLSSK NSEDFDEIKG 900 TGALTDHCED ATGISNAATP DQTHTDINES HPGEPWVQGL TEGEYSDLSV DERLSALVAL 960 IGVAIEGNSV RIALEERLEA ANALKKQMWA ETQLDKRRIK EDCMLKMQYS SYMGNKAEPS 1020 LAISSADGRQ SPLVTVDDKS NGMLVDLNLQ QGQFGEPQKD QNCNTSMPPE GNQDYPVGPD 1080 NLVNQQSAYA AEKSRMQLKS YIGQKAEETY VCRSLPLGQD RRRNRYWRFI TSMSENDPGC 1140 GRIFVELCDG RWRLIDSEES FDALLASLDV RGLRESHLHS VLQMIEMSFK ETVRRNLQHV 1200 TTEVQNHETV KAEVIERASC PDYTGTDNPS SIVCDSDSEI SDTSTSFSIE LGRDDVLRND 1260 ALKRYQDYER WMWKECVNSS ILCAMEYGKK RCKQVLGVCD YCHDLYFFED SHCPSCHKTF 1320 DTSKRYLNFS EHVAQCQGKL KMNPAWSSCT SFSSPLRIRL LKVLLALFEG SVPSEALQSI 1380 WNDSYRNSWG MKLNSSLSAD SLVQILTQLE NAIKRDYLSS NFETTSEFLD SSNSSACTSN 1440 SSSSPEIVSV LPWVPKTTAA VGLRLMELDR SIAYLPHQRV EFQKEKREGN LMKLPSKYAA 1500 VKNTRDGEDQ VNYLQVEEAN RVGVGIGFAA PSHGRGICGR ARGCLNTGRS QKRVAGSRRD 1560 SGKRSTNTKS GRLVLVLKGQ SHGQGSRKRG RRSARSRRKS TKRVVVEKDA PKQSIFDKPR 1620 DLAGDGWNRD EIPRLQVDDA ENASISGRSG YGEENGQATG DEYNDMIDEY AGGFNSRSND 1680 LQEGSDDIVD GDEEDDEDEM GDGGAEDEQG YLGVEEYVNE ESDEEGIRDG DGG*

Sequence ? help Back to Top

Protein Sequence Length: 1734 aa Download sequence Send to blast

MEAASEAEEK KKKKPLEGEV KTKRKMKTAS QLEILEKTYA VESYPSEALR AELSAQLGLS  60
DRQLQMWFCH RRLKDRKAPT AKRQPKDFQS LVPAGEKELA GSELVRGGMA VQRFYEVPMA  120
PMLPFPLPQR NIAEMRAIAF VESQLGEPLR EDGPILGVEF DSLPPDAFGR PIGPAAMGHQ  180
KHSVRPLEAK EYERLDVKPF KGATRTVHEY KFLPEQPTVR SETHEKAASS YPYGSPADGS  240
TARNSSLRAG HPFMHGSEQI SSGYGFPGQL PNLNLLSHQG RHSHLLPSVS GEYENILQKN  300
SFISAGMDAH VGGQPITAMD NAFISYDRRV SHDEDVSRTE KKRKSEEARI AREVEAHEKR  360
IRKELEKQDI LRRKREEQIR KEMERQDRER RKEEERLLRE KLREEERYLR EQRRELERRE  420
KFLQKESIRA EKRRQKEELR RVKEAERLKV ANERAVARRI AKESMALVED ERLELMELAA  480
SSKGLPTIVS LDFETLQNLD LFRDRLCTFP PKSVQLKRPF AVQPWNDSED NIGNLLMVWR  540
FLITFADVLG LWPFTLDEFV QAFHDYDPRL LGEIHVALLR SVIKDIEDAA KTPFTGLGAN  600
QNSAVNPGGA HPQIVEGAYA WGFDIRSWQL HLNALTWPEI LRQFALSAGF GPQLNKRNIE  660
KMYPHDNNEG NDGENIISNL RNGSAVGNAV AIMHEMGLSN LRRSRHRLTP GTVKFAAFHV  720
LSLEGSEGLT ILEVADKIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT APSTYCVRAA  780
YRKDPGDADA ILSAARERIR VFKRGFVDGE EADDAERDEE RDEDSDSDVP EVPDVYDMDT  840
DLNSKEETHE YLEANSCGAK TPLGNREANI KGIESPQGDL GNSGRGLSSK NSEDFDEIKG  900
TGALTDHCED ATGISNAATP DQTHTDINES HPGEPWVQGL TEGEYSDLSV DERLSALVAL  960
IGVAIEGNSV RIALEERLEA ANALKKQMWA ETQLDKRRIK EDCMLKMQYS SYMGNKAEPS  1020
LAISSADGRQ SPLVTVDDKS NGMLVDLNLQ QGQFGEPQKD QNCNTSMPPE GNQDYPVGPD  1080
NLVNQQSAYA AEKSRMQLKS YIGQKAEETY VCRSLPLGQD RRRNRYWRFI TSMSENDPGC  1140
GRIFVELCDG RWRLIDSEES FDALLASLDV RGLRESHLHS VLQMIEMSFK ETVRRNLQHV  1200
TTEVQNHETV KAEVIERASC PDYTGTDNPS SIVCDSDSEI SDTSTSFSIE LGRDDVLRND  1260
ALKRYQDYER WMWKECVNSS ILCAMEYGKK RCKQVLGVCD YCHDLYFFED SHCPSCHKTF  1320
DTSKRYLNFS EHVAQCQGKL KMNPAWSSCT SFSSPLRIRL LKVLLALFEG SVPSEALQSI  1380
WNDSYRNSWG MKLNSSLSAD SLVQILTQLE NAIKRDYLSS NFETTSEFLD SSNSSACTSN  1440
SSSSPEIVSV LPWVPKTTAA VGLRLMELDR SIAYLPHQRV EFQKEKREGN LMKLPSKYAA  1500
VKNTRDGEDQ VNYLQVEEAN RVGVGIGFAA PSHGRGICGR ARGCLNTGRS QKRVAGSRRD  1560
SGKRSTNTKS GRLVLVLKGQ SHGQGSRKRG RRSARSRRKS TKRVVVEKDA PKQSIFDKPR  1620
DLAGDGWNRD EIPRLQVDDA ENASISGRSG YGEENGQATG DEYNDMIDEY AGGFNSRSND  1680
LQEGSDDIVD GDEEDDEDEM GDGGAEDEQG YLGVEEYVNE ESDEEGIRDG DGG*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047743.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Refseq	XP_024047744.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	V4U769	0.0	V4U769_9ROSI; Uncharacterized protein
STRING	XP_006446705.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9601	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Ciclev10014022m
Entrez Gene	18051836