PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013892m
Common NameCICLE_v10013892mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 722aa    MW: 83944.9 Da    PI: 8.6986
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013892mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1531.1e-16182271290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       Y  YAk  GF vrk++++    ng+++ r++vCs+eg++  +  + t+++r  r+ trtgC+a l++  ++ +g w  t l   HnH+l+
  Ciclev10013892m 182 LYFLYAKLKGFGVRKDAKRID-GNGKVKGRRWVCSREGFKPCKYLEnTNRKRAARPLTRTGCRAGLRILFDEkKGAWISTILTAYHNHNLT 271
                      6889***********998776.8999**************9987664788999***************998889**************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.6E-15182271IPR004330FAR1 DNA binding domain
PfamPF105511.2E-30372466IPR018289MULE transposase domain
PROSITE profilePS509668.395649685IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
QKLKNINRNE ERKLVFSPVE LSATTPTKRN EQAQVSLLLF IFPVVLIISF GDSNKHYSVL  60
KNRFYQFFLL TLYVVYLQHL KPLTLVLSSG GIETHVQMDD VNGSVLVFVK FDGDEHYIGR  120
VYLELWTWYG LVANTLGRRA LPNETSTNPQ SGIIQQEATY EMLENRFAVG SEFANEDEAE  180
SLYFLYAKLK GFGVRKDAKR IDGNGKVKGR RWVCSREGFK PCKYLENTNR KRAARPLTRT  240
GCRAGLRILF DEKKGAWIST ILTAYHNHNL TLPHHVHYIR AHRKIHEYMV QCSGGYSEVG  300
YMRRDVENVV ASQKRKQLQD FDSESCIAYL NGKKSSDPSF YFEYTIDDEH RLGDIFWCDG  360
GCRADYAIFG DVIAFDTTYR TNAYLKPLVV IVGINHHYKT TIFGFALLTA ETEQAYTWLL  420
VTFLHAMEGK HPKAVLTDGD KAMRKAISTT LPQSIHRLCC WHLERNAQSN VGRTEFTADF  480
KDCMLYTKDH QDFQDKWDAM VRKHQVESNE WVKKMYVDRN LWAEPYFKWQ FLGGMRSTQR  540
CEGFNAFLNY YVNRKLRLIE FVDQIDRLMS KQREMEGKDD FDSSYGSPVL CTHLRQYEQQ  600
AGEIYTKSMF EKVRTELNKE GLLFIKGYVD DISTRTYSIG EFRKANKEWK VVFHHQTKLA  660
ACQCQLLERL GIPCSHSYTV LKAEDVQSIP ECMQLMRWLK TAKINNPPQN DDQAEKVYMS  720
KL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043032.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4S3210.0V4S321_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006428533.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3299122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-92FAR1-related sequence 5