PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013881m
Common NameCICLE_v10013881mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 667aa    MW: 77197.3 Da    PI: 9.4823
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013881mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.56e-2530115190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +fYneYAk+vGFsvr+++s+ks + gei+++++vCskeg +++e  +   ++r+ ++ r gCkakl v k+k+g+++v+ +e++HnH+l+
  Ciclev10013881m  30 EFYNEYAKKVGFSVRINSSRKS-HRGEIVRKEYVCSKEGATTKEVVE---KKRRCSKVREGCKAKLAVVKSKSGTYVVSVFEEDHNHPLT 115
                      6********************9.6777**************999766...88888999******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-2230115IPR004330FAR1 DNA binding domain
PfamPF105515.2E-28236321IPR018289MULE transposase domain
PROSITE profilePS509669.953467515IPR007527Zinc finger, SWIM-type
PfamPF044343.9E-6485509IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-4490517IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
RDKVYKPVVI PHDHMPRLGQ EFVLLDDVHE FYNEYAKKVG FSVRINSSRK SHRGEIVRKE  60
YVCSKEGATT KEVVEKKRRC SKVREGCKAK LAVVKSKSGT YVVSVFEEDH NHPLTTPRRV  120
HLLRSHRNVS EVKRSLTHQL AAANIPIHQQ ISVLELQGGG IQNIGCLGKD LYNDETKSKN  180
KVKGHDADML LEHFQLEKEK NSAFTFTIES DNENRITHCF WADATSRRGY NSFGDVVVFD  240
TTYNTNKYGM IFAPFIGVNN HGQTTVFACS FLSDETTESF VWLFEQFKKA MPGDLPKMII  300
TDQDPAITKA ISETLPNTFH RDDFDRNWLE IIEKGKLRDN AWLKSVFEIR SKWVPAYVNH  360
VFSAGMSSSQ RAESYHFFFK RYVSKKNSLL DFMIRFNRAL NHQRHEELNA NHADINEKPT  420
LKLPLKMEKQ MVSLYTREIF YKFQDELWDS LQHKIELVKE DAHHCVYKVV NQNEDDDVHE  480
VLFDKTLDFA SCICKKFESK GIPCKHILAY FHRKQFTYLP DQYILKRWTK SARCDKVIGD  540
GGLEIEDCFQ NSILMRRTAL FQLASNVIDK AVISEEASKI LMDDFENSLR KIKSVVSQDP  600
KAMEKNKCTD QHVLNDPLVV RAKGCGKRLK KRKEKARAKD KNRRCHGCGK IGQSHDKRNC  660
PMLKNR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1626632KRLKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024038310.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLV4URE30.0V4URE3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006428864.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-113FAR1-related sequence 5