PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013851m
Common NameCICLE_v10013851mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 724aa    MW: 79072.1 Da    PI: 6.3717
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013851mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11296352155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Ciclev10013851m 296 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 352
                      57*******************4444.2455535555.779999**************98 PP
2AP246.68.3e-15395446155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Ciclev10013851m 395 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 446
                      57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8296352IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-15296362IPR016177DNA-binding domain
CDDcd000183.22E-19296362No hitNo description
SMARTSM003801.1E-22297366IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-12297361IPR001471AP2/ERF domain
PROSITE profilePS5103217.319297360IPR001471AP2/ERF domain
PRINTSPR003674.9E-6298309IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17395455IPR016177DNA-binding domain
PfamPF008471.0E-9395446IPR001471AP2/ERF domain
CDDcd000181.56E-24395454No hitNo description
SMARTSM003802.4E-33396460IPR001471AP2/ERF domain
PROSITE profilePS5103219.045396454IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-18396454IPR001471AP2/ERF domain
PRINTSPR003674.9E-6436456IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MNNWLGFSLS PQEQLPSSQT DHHHHHQDHS QDSVSHRLGF NSDELSGAVV SGDCFDLTSA  60
DSTTASFSIL EAFNRNNNHS QEWNMKGLGM NTDAMLMATS CNDQNQEPKL ENFLDGHSFS  120
NHEQKLHGCT SVYDTPTAST VTGDYMFQNC SLQLPLDENN NNNARTSNNG GENSNNNNSS  180
IGLSMIKTWL RNQPAPATGP APAPAQAEAV SMNGSGGSSA QSLSLSMSTG SQPGSTLPLL  240
NANGGLNGVE SSCSDNNKQQ KTTAGTATAG IDLESQTGAI EAVPRKSIDT FGQRTSIYRG  300
VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA RAYDLAALKY WGTTTTTNFP  360
ISNYEKEVEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMTRYDV NSILESSTLP IGGAAKRLKD  480
AEQAAEMTID RPTVVADDEN MSSQLTADHG WPAIAAFQQA QAHHHHQHQP YSSLQPFGYG  540
QRIWCKQEQD EFNHQLQLGS NNSNAHNFFQ PSVMHNLMNM ESSSLEHSCT SNNSVIYNNG  600
DHTNGSYQVG YGSNNNNNNG GFVIPMGTVI ASNNDHGFGE SDHQAAAKAL AFENMFSSST  660
SSSDPYQARN LYYLPQQQSS ASLVKAAGAY DNWVPTAVPT LAQRSGNIAL CHGAPTFTVW  720
NDT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955383.10.0AP2-like ethylene-responsive transcription factor BBM1
TrEMBLV4SXL40.0V4SXL4_9ROSI; Uncharacterized protein
STRINGXP_006480499.10.0(Citrus sinensis)
STRINGXP_006428686.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-123AP2 family protein