PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013705m | ||||||||
Common Name | CICLE_v10013705mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LBD | ||||||||
Protein Properties | Length: 358aa MW: 39563.7 Da PI: 9.358 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.5 | 1.6e-31 | 67 | 170 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q Ciclev10013705m 67 SCNGCRVLRKGCNENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAVFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQ 160 6********************************************************************************************* PP DUF260 90 lkaelallke 99 +++e++l ++ Ciclev10013705m 161 AAVEAVLKGA 170 ****998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 3.2E-94 | 64 | 355 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 17.097 | 66 | 172 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-25 | 67 | 165 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MWKPFIKPEQ TKPSSPLFPL KYPLFSCTLL TERTHKKKKK REKKEHKLTF SHFIFSPKIR 60 TLKMRMSCNG CRVLRKGCNE NCSIRPCLQW IKSPESQANA TVFLAKFYGR AGLMNLINAG 120 PEHLRPAVFR SLLYEACGRI VNPIYGSVGL LWSGSWQLCQ AAVEAVLKGA PITPINSEAA 180 AIGQGPPLKA YDIRHVSKDE NSSASVDRVK TRCRVKRVVK PKANCNKAEV NMVDELARCA 240 EEMNRSTSHE SSLSHQSELA VVENESKESD SMVSAETAET ASLLFRAEPE SGAKPSERVG 300 WDSCGEIGLG LELTLGFEPV AVSRANHVVP MKKRKLEARS TCDGDTCKVE LGLDFPA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 43 | KKKKKREKK |
2 | 36 | 43 | KKKKREKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024037317.1 | 0.0 | LOB domain-containing protein 40 | ||||
Swissprot | Q9M886 | 1e-105 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | V4SY62 | 0.0 | V4SY62_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430780.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7721 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-94 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013705m |
Entrez Gene | 18038388 |