PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013694m
Common NameCICLE_v10013694mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 329aa    MW: 37563.4 Da    PI: 8.131
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013694mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.88.6e-40131241128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhP+deel+v+yL++kv++ +l++ ++i+e+++yk++PwdLp                ++ky++g r+nra++sg+Wkatg+dk++l+
  Ciclev10013694m  13 LPPGFRFHPSDEELIVHYLTNKVASIPLPA-SIIAEINLYKYNPWDLP----------------NRKYPNGARPNRAAASGFWKATGTDKPILT 89 
                      79****************************.89**************9................589*************************** PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++ +g+kk Lvfy+gr pkg ktdW+mheyrl
  Ciclev10013694m  90 SfGTKSIGVKKALVFYEGRPPKGYKTDWIMHEYRL 124
                      989999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-526151IPR003441NAC domain
PROSITE profilePS5100547.43213151IPR003441NAC domain
PfamPF023659.1E-2214124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGYLTAAPPH IQLPPGFRFH PSDEELIVHY LTNKVASIPL PASIIAEINL YKYNPWDLPN  60
RKYPNGARPN RAAASGFWKA TGTDKPILTS FGTKSIGVKK ALVFYEGRPP KGYKTDWIMH  120
EYRLPDTIAW TPKRKGSMRL DDWVLCRVRQ KSINSRKAWD DRNGYSYEAA PGFISKVNEL  180
KHMNNTNPNV EMVKSYLYND CSMLPYIFAS RDFTSCCIDT DSNISFQGGD KSCLAAHDED  240
SLFNPLKRIK LMEKNQQDDC VTPSKKIKEG YVHKEEEIIL SVSNESTGET NIYETDHSEG  300
NNFSHDHHQW SRTMQYHQEL NNLVFTGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-531015714171NO APICAL MERISTEM PROTEIN
1ut4_B7e-531015714171NO APICAL MERISTEM PROTEIN
1ut7_A7e-531015714171NO APICAL MERISTEM PROTEIN
1ut7_B7e-531015714171NO APICAL MERISTEM PROTEIN
3swm_A8e-531015717174NAC domain-containing protein 19
3swm_B8e-531015717174NAC domain-containing protein 19
3swm_C8e-531015717174NAC domain-containing protein 19
3swm_D8e-531015717174NAC domain-containing protein 19
3swp_A8e-531015717174NAC domain-containing protein 19
3swp_B8e-531015717174NAC domain-containing protein 19
3swp_C8e-531015717174NAC domain-containing protein 19
3swp_D8e-531015717174NAC domain-containing protein 19
4dul_A7e-531015714171NAC domain-containing protein 19
4dul_B7e-531015714171NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027296.21e-137PREDICTED: NAC domain-containing protein 2 isoform X1
TrEMBLV4SMY80.0V4SMY8_9ROSI; Uncharacterized protein
STRINGXP_006428812.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17560810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.12e-67NAC domain containing protein 25