PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10013509m | ||||||||
Common Name | CICLE_v10013509mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 223aa MW: 24697.1 Da PI: 9.6925 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.9 | 6.8e-10 | 141 | 187 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GV++++++grW+++I+ +f g f+ta +Aa+ ++ a+ +++g Ciclev10013509m 141 SHYLGVTFYRRTGRWESHIWL-------VNFA-GGFDTAPDAARVYDLAAIRFRG 187 7899*****************.......7888.66*****************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.20E-14 | 141 | 194 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-10 | 141 | 196 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 13.63 | 142 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-10 | 142 | 195 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-17 | 142 | 201 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence Send to blast |
MLDLNLSLRT SSSAGGGGGG GSCNNIVREK KVLELSNSNY NHTGTSRTFL LHPSSSVTTT 60 THSASSSSDV SFSAVGYSFS TLQSYNNNPN NNNNSNDSDD KTIQFFPANS EAEGVNNKQA 120 AMLQPRRQVK KLRRGPRSRS SHYLGVTFYR RTGRWESHIW LVNFAGGFDT APDAARVYDL 180 AAIRFRGLDA EINFSIDDYR EDLKYMNTYT KDEFVSALRL RH* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:A0A0N7KMH0, ECO:0000250|UniProtKB:P47927}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024038547.1 | 1e-113 | floral homeotic protein APETALA 2 | ||||
Swissprot | A0A0N7KMH0 | 2e-31 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
Swissprot | B8B0I8 | 2e-31 | AP24_ORYSI; APETALA2-like protein 4 | ||||
TrEMBL | V4SY88 | 1e-162 | V4SY88_9ROSI; Uncharacterized protein | ||||
STRING | XP_006428896.1 | 1e-163 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32970 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60120.1 | 2e-31 | target of early activation tagged (EAT) 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10013509m |
Entrez Gene | 18039133 |
Publications ? help Back to Top | |||
---|---|---|---|
|