PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10013435m | ||||||||
Common Name | CICLE_v10013435mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YC | ||||||||
Protein Properties | Length: 186aa MW: 21519.8 Da PI: 6.6777 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 130 | 8.1e-41 | 78 | 180 | 2 | 99 |
NF-YC 2 lksfwekq...iek..atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 ++sfwe+q ie+ ++ ++nh lPlarikk++k+ e+vkm +a++P++++kace+fi+eltlr+wl++e+ krrtl+++dia a+ + fd Ciclev10013435m 78 VQSFWEQQksdIENatTESLRNHLLPLARIKKVMKSREEVKMTTADSPAVFAKACEMFIMELTLRAWLQTEDGKRRTLQRCDIARALRLDELFD 171 689****98886651145789************************************************************************* PP NF-YC 91 flvdivprd 99 fl+d vp d Ciclev10013435m 172 FLIDFVPYD 180 ******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00125 | 1.2E-17 | 58 | 167 | IPR007125 | Histone H2A/H2B/H3 |
SuperFamily | SSF47113 | 1.37E-26 | 68 | 173 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.3E-30 | 102 | 178 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
TPSLTRKLHK RIIMRRPKVD LNVSEDDFTP SSTPSQDAAP VHNFMPMTPF MLPSHQPTEE 60 DEEEAHSLAL MMKQRQLVQS FWEQQKSDIE NATTESLRNH LLPLARIKKV MKSREEVKMT 120 TADSPAVFAK ACEMFIMELT LRAWLQTEDG KRRTLQRCDI ARALRLDELF DFLIDFVPYD 180 CRQVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_C | 2e-33 | 69 | 178 | 10 | 118 | HapE |
4g92_C | 2e-33 | 69 | 178 | 10 | 118 | HapE |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430712.2 | 1e-123 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-37 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | V4ST92 | 1e-134 | V4ST92_9ROSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006430712.1 | 1e-134 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18090 | 7 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 5e-40 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10013435m |
Entrez Gene | 18038713 |
Publications ? help Back to Top | |||
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