PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10013340m | ||||||||
Common Name | CICLE_v10013340mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 335aa MW: 36860.1 Da PI: 8.0956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.7 | 2.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +l+ v+ +G+g+W++++++ g++R++k+c++rw +yl Ciclev10013340m 14 RGLWTPEEDAKLLAHVANHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.4 | 1.6e-13 | 71 | 110 | 5 | 46 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + E+e++++++k G++ W++Ia+ ++ gRt++++k++w++ Ciclev10013340m 71 APHEEEIIINLHKAIGSR-WSLIAQQLP-GRTDNDVKNFWNT 110 589***************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.3E-25 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.092 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.59E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-17 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.72E-12 | 17 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-23 | 64 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-11 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 16.103 | 66 | 116 | IPR017930 | Myb domain |
CDD | cd00167 | 5.85E-9 | 72 | 110 | No hit | No description |
Pfam | PF00249 | 2.5E-11 | 72 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 335 aa Download sequence Send to blast |
MGRPPCCDKS NVKRGLWTPE EDAKLLAHVA NHGTGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRPDLRHASF APHEEEIIIN LHKAIGSRWS LIAQQLPGRT DNDVKNFWNT KLKKKLMKLG 120 IDPITHKPFS QIFSDYGNIS GLSINTGNHF GKSINNSLMS KPEPSLVLNG VQNTSYDNPL 180 WDYMAQFHAP VQPHFLTEVA SSCSSSSSGA VTQLNSPQSH AQITPSSPFN WSEFLACDTS 240 LSVDLQQQQH LGPQRMLSSP NSTFTRNETF GCHFTSKNDH GSAGSNYTTS YANQVSKGAS 300 AASSSSSSFV DAILSKDSEM SSQLFELLDE SFDY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. | |||||
Uniprot | TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431044.1 | 0.0 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 1e-85 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | V4UWZ5 | 0.0 | V4UWZ5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431044.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G28470.1 | 2e-83 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10013340m |
Entrez Gene | 18038854 |
Publications ? help Back to Top | |||
---|---|---|---|
|