PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10013311m
Common NameCICLE_v10013311mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 173aa    MW: 18881.1 Da    PI: 10.8992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10013311mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00144466123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ F++   L  H  +H
  Ciclev10013311m 44 FECKTCNRQFPSFQALGGHRASH 66
                     89**********99999998887 PP
2zf-C2H213.40.0002390112123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++C++Cg+ F     L  H+r+H
  Ciclev10013311m  90 HECSICGQEFAMGQALGGHMRRH 112
                      78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-943112No hitNo description
PfamPF139122.8E-134368IPR007087Zinc finger, C2H2
SMARTSM003550.164466IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8274471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.00188112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.84790112IPR007087Zinc finger, C2H2
SMARTSM003550.09590112IPR015880Zinc finger, C2H2-like
PfamPF139128.3E-1190113IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAVKGGLANG EIAERLALAN CLMLLTRSNR AKLPIKKRLA SDVFECKTCN RQFPSFQALG  60
GHRASHKKPR LINGETKTLS STTATKPKLH ECSICGQEFA MGQALGGHMR RHRIAMNESL  120
NSAVIVSQSP PVLRRSNSSR RVFGLDLNLT PLENDLEALF GKMVPKVDLL MT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429010.11e-124zinc finger protein ZAT11
RefseqXP_006480743.11e-124zinc finger protein ZAT11
SwissprotQ9SLD41e-46ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLV4STE51e-123V4STE5_9ROSI; Uncharacterized protein
STRINGXP_006480743.11e-123(Citrus sinensis)
STRINGXP_006429010.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.15e-49C2H2 family protein