PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012691m | ||||||||
Common Name | CICLE_v10012360mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 224aa MW: 23301.6 Da PI: 9.971 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.6e-07 | 41 | 54 | 14 | 27 |
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 Ck+Gd+C+FaHg+ Ciclev10012691m 41 GCKFGDKCHFAHGE 54 6***********96 PP | |||||||
2 | zf-CCCH | 36.9 | 6.1e-12 | 190 | 214 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg Ciclev10012691m 190 FKTKLCGNFAK-GSCTFGDRCHFAHG 214 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.96E-7 | 26 | 58 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.16 | 28 | 55 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-12 | 28 | 58 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2 | 29 | 54 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-4 | 41 | 54 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 4.53E-16 | 87 | 167 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.8E-13 | 96 | 166 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 6.0E-17 | 96 | 165 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.948 | 97 | 161 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 8.7E-13 | 99 | 163 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.44E-15 | 99 | 161 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-16 | 187 | 220 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.29E-9 | 188 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 189 | 215 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 189 | 216 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 190 | 214 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MMNLPQAVPA PSRNMAVPPP ASNGPTVVKS RMCNRLNSAE GCKFGDKCHF AHGEWELGKP 60 IAISHDDPRA FGAVPGRMGG RYEPPPAPGP AASFGASATA KISVDASLAG AIIGKGGVNS 120 KQICRQTGAK LSIRDHEADP NLRNIELEGS FEQIKQASAM VRELIVRIGP AHAKNPATAG 180 SAAHPLSSNF KTKLCGNFAK GSCTFGDRCH FAHGAAELRK TAI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429867.1 | 1e-162 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_006429870.1 | 1e-162 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q69XQ3 | 2e-85 | C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44 | ||||
TrEMBL | A0A067FU61 | 1e-161 | A0A067FU61_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067G5T7 | 1e-162 | A0A067G5T7_CITSI; Uncharacterized protein | ||||
TrEMBL | V4S6L3 | 1e-162 | V4S6L3_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4SVR3 | 1e-161 | V4SVR3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006429867.1 | 1e-162 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-60 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012691m |
Entrez Gene | 18037920 |