PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012689m
Common NameCICLE_v10012360mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 224aa    MW: 23301.6 Da    PI: 9.971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012689mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-0741541427
                     --TTTTT-SS-SSS CS
          zf-CCCH 14 tCkyGdrCkFaHgp 27
                      Ck+Gd+C+FaHg+
  Ciclev10012689m 41 GCKFGDKCHFAHGE 54
                     6***********96 PP
2zf-CCCH36.96.1e-12190214126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC +fa+ G C +GdrC+FaHg
  Ciclev10012689m 190 FKTKLCGNFAK-GSCTFGDRCHFAHG 214
                      69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-72658IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.162855IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-122858IPR000571Zinc finger, CCCH-type
SMARTSM003563.22954IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-44154IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.53E-1687167IPR004088K Homology domain, type 1
SMARTSM003223.8E-1396166IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.106.0E-1796165IPR004088K Homology domain, type 1
PROSITE profilePS5008414.94897161IPR004088K Homology domain, type 1
PfamPF000138.7E-1399163IPR004088K Homology domain, type 1
CDDcd001051.44E-1599161No hitNo description
Gene3DG3DSA:4.10.1000.106.3E-16187220IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-9188220IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7189215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892189216IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9190214IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MMNLPQAVPA PSRNMAVPPP ASNGPTVVKS RMCNRLNSAE GCKFGDKCHF AHGEWELGKP  60
IAISHDDPRA FGAVPGRMGG RYEPPPAPGP AASFGASATA KISVDASLAG AIIGKGGVNS  120
KQICRQTGAK LSIRDHEADP NLRNIELEGS FEQIKQASAM VRELIVRIGP AHAKNPATAG  180
SAAHPLSSNF KTKLCGNFAK GSCTFGDRCH FAHGAAELRK TAI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429867.11e-162zinc finger CCCH domain-containing protein 14
RefseqXP_006429870.11e-162zinc finger CCCH domain-containing protein 14
SwissprotQ69XQ32e-85C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A067FU611e-161A0A067FU61_CITSI; Uncharacterized protein
TrEMBLA0A067G5T71e-162A0A067G5T7_CITSI; Uncharacterized protein
TrEMBLV4S6L31e-162V4S6L3_9ROSI; Uncharacterized protein
TrEMBLV4SVR31e-161V4SVR3_9ROSI; Uncharacterized protein
STRINGXP_006429867.11e-162(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-60C3H family protein