PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012622m | ||||||||
Common Name | CICLE_v10012182mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 238aa MW: 25572.3 Da PI: 4.4329 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5.1e-06 | 210 | 233 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF++ L++H + H Ciclev10012622m 210 FPCKSCNRSFTTEGGLQSHTKAkH 233 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 8.2E-5 | 209 | 232 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.741 | 210 | 237 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.006 | 210 | 233 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 212 | 233 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MFLASLTALC FVPTTDDDDN SDSDEDKMDI RLVSNGKPEL QAKPLSEKPI AVEPSASTAK 60 QNKKDVKPKQ KADGSDSDDS DLNTSSSDDD ETSDDENPNL VNRDGSSDES SGELDESDDD 120 EDDEGTDESE SGDEDEETPK KAESNKKRPV ESASKTHVPD KKAKFVTPQK TEERKGVSHI 180 ATPHPSKKSA KTLANSDQTK QQPRKSGSSF PCKSCNRSFT TEGGLQSHTK AKHGAPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.918 | 0.0 | abscission zone| flower| vegetative tissue |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430307.1 | 1e-154 | histone deacetylase HDT1 | ||||
TrEMBL | V4SWW5 | 1e-166 | V4SWW5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430307.1 | 1e-153 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 4e-21 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012622m |
Entrez Gene | 18039993 |