PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012363m | ||||||||
Common Name | CICLE_v10012360mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 291aa MW: 30570.8 Da PI: 9.9956 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 33 | 56 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H Ciclev10012363m 33 KSKPCTKFFSTAGCPFGESCHFLH 56 7789******************** PP | |||||||
2 | zf-CCCH | 21.2 | 5.1e-07 | 108 | 121 | 14 | 27 |
--TTTTT-SS-SSS CS zf-CCCH 14 tCkyGdrCkFaHgp 27 Ck+Gd+C+FaHg+ Ciclev10012363m 108 GCKFGDKCHFAHGE 121 6***********96 PP | |||||||
3 | zf-CCCH | 36.4 | 8.6e-12 | 257 | 281 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg Ciclev10012363m 257 FKTKLCGNFAK-GSCTFGDRCHFAHG 281 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.699 | 31 | 59 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6 | 31 | 58 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.03E-6 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-4 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-7 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-7 | 93 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.16 | 95 | 122 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-11 | 95 | 125 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.2 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-4 | 108 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.89E-16 | 154 | 234 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.0E-16 | 163 | 232 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.8E-13 | 163 | 233 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.948 | 164 | 228 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.4E-12 | 166 | 230 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.67E-15 | 166 | 228 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 9.3E-16 | 254 | 287 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 255 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.892 | 256 | 283 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-7 | 256 | 282 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 257 | 281 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FSTAGCPFGE SCHFLHYFPG 60 GYNAVAQMMN LPQAVPAPSR NMAVPPPASN GPTVVKSRMC NRLNSAEGCK FGDKCHFAHG 120 EWELGKPIAI SHDDPRAFGA VPGRMGGRYE PPPAPGPAAS FGASATAKIS VDASLAGAII 180 GKGGVNSKQI CRQTGAKLSI RDHEADPNLR NIELEGSFEQ IKQASAMVRE LIVRIGPAHA 240 KNPATAGSAA HPLSSNFKTK LCGNFAKGSC TFGDRCHFAH GAAELRKTAI * |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00113 | ampDAP | Transfer from AT3G12130 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429867.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Refseq | XP_006429870.1 | 0.0 | zinc finger CCCH domain-containing protein 14 | ||||
Swissprot | Q7F8R0 | 1e-113 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A067FU61 | 0.0 | A0A067FU61_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SVR3 | 0.0 | V4SVR3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006429867.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-87 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012363m |
Entrez Gene | 18037920 |