PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012360m
Common NameCICLE_v10012360mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 291aa    MW: 30570.8 Da    PI: 9.9956
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012360mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063356225
                     -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                     k ++C  f+ t  C++G++C+F H
  Ciclev10012360m 33 KSKPCTKFFSTAGCPFGESCHFLH 56
                     7789******************** PP
2zf-CCCH21.25.1e-071081211427
                      --TTTTT-SS-SSS CS
          zf-CCCH  14 tCkyGdrCkFaHgp 27 
                       Ck+Gd+C+FaHg+
  Ciclev10012360m 108 GCKFGDKCHFAHGE 121
                      6***********96 PP
3zf-CCCH36.48.6e-12257281126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC +fa+ G C +GdrC+FaHg
  Ciclev10012360m 257 FKTKLCGNFAK-GSCTFGDRCHFAHG 281
                      69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.6993159IPR000571Zinc finger, CCCH-type
SMARTSM003561.63158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-63257IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43356IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-73356IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-793125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.1695122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-1195125IPR000571Zinc finger, CCCH-type
SMARTSM003563.296121IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4108121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.89E-16154234IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.0E-16163232IPR004088K Homology domain, type 1
SMARTSM003223.8E-13163233IPR004087K Homology domain
PROSITE profilePS5008414.948164228IPR004088K Homology domain, type 1
PfamPF000131.4E-12166230IPR004088K Homology domain, type 1
CDDcd001051.67E-15166228No hitNo description
Gene3DG3DSA:4.10.1000.109.3E-16254287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8255287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.892256283IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7256282IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-9257281IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDTRKRTKPE TGINANGVFK KSKHESESGV GSKSKPCTKF FSTAGCPFGE SCHFLHYFPG  60
GYNAVAQMMN LPQAVPAPSR NMAVPPPASN GPTVVKSRMC NRLNSAEGCK FGDKCHFAHG  120
EWELGKPIAI SHDDPRAFGA VPGRMGGRYE PPPAPGPAAS FGASATAKIS VDASLAGAII  180
GKGGVNSKQI CRQTGAKLSI RDHEADPNLR NIELEGSFEQ IKQASAMVRE LIVRIGPAHA  240
KNPATAGSAA HPLSSNFKTK LCGNFAKGSC TFGDRCHFAH GAAELRKTAI *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429867.10.0zinc finger CCCH domain-containing protein 14
RefseqXP_006429870.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-113C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A067FU610.0A0A067FU61_CITSI; Uncharacterized protein
TrEMBLV4SVR30.0V4SVR3_9ROSI; Uncharacterized protein
STRINGXP_006429867.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-87C3H family protein