PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012232m | ||||||||
Common Name | CICLE_v10012232mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NF-YA | ||||||||
Protein Properties | Length: 318aa MW: 34783.1 Da PI: 9.5928 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.1 | 4e-30 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++I++RR++Rak+ e+k+ +++rkpy+h+SRh hA+rRpRg+gGrF Ciclev10012232m 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKI-TRKRKPYMHHSRHLHAMRRPRGCGGRF 206 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-34 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.814 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.2E-26 | 152 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.1E-22 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.1E-22 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MAMQTVYFKE HHEGNGHNQN GQLSSVHSSA PWWSSLGSQS VYGASCGQLK PLSMETSTEE 60 AGQTQDKPNT THFSFFPGDV KSSGDGQKLP PAISLQSALP ENPGCFELGF GQPMICAKYP 120 YADQYYGVFS AYGAQISGRI MLPLNLATDD GPIYVNAKQY HGIIRRRKSR AKAVLENKIT 180 RKRKPYMHHS RHLHAMRRPR GCGGRFLNTK TRDGSGRTEE KKTCIQQLLQ PTGSQSSEVL 240 QSESGTLSSP KETNGSGPNL SGSEVTSMYS RGEFGHFRIN HLRPPVHSFS GIMDTGRGIV 300 MPSQWVAAAD NCCNLKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-17 | 150 | 213 | 2 | 65 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 165 | 183 | RRKSRAKAVLENKITRKRK |
2 | 165 | 184 | RRKSRAKAVLENKITRKRKP |
3 | 166 | 184 | RKSRAKAVLENKITRKRKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430046.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | V4T1B6 | 0.0 | V4T1B6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430046.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3008 | 27 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 2e-72 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012232m |
Entrez Gene | 18038066 |