PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012232m
Common NameCICLE_v10012232mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 318aa    MW: 34783.1 Da    PI: 9.5928
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012232mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.14e-30150206158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      d p+YVNaKQy++I++RR++Rak+  e+k+ +++rkpy+h+SRh hA+rRpRg+gGrF
  Ciclev10012232m 150 DGPIYVNAKQYHGIIRRRKSRAKAVLENKI-TRKRKPYMHHSRHLHAMRRPRGCGGRF 206
                      57****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.8E-34148209IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.814149209IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.2E-26152206IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-22152174IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-22183206IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAMQTVYFKE HHEGNGHNQN GQLSSVHSSA PWWSSLGSQS VYGASCGQLK PLSMETSTEE  60
AGQTQDKPNT THFSFFPGDV KSSGDGQKLP PAISLQSALP ENPGCFELGF GQPMICAKYP  120
YADQYYGVFS AYGAQISGRI MLPLNLATDD GPIYVNAKQY HGIIRRRKSR AKAVLENKIT  180
RKRKPYMHHS RHLHAMRRPR GCGGRFLNTK TRDGSGRTEE KKTCIQQLLQ PTGSQSSEVL  240
QSESGTLSSP KETNGSGPNL SGSEVTSMYS RGEFGHFRIN HLRPPVHSFS GIMDTGRGIV  300
MPSQWVAAAD NCCNLKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-17150213265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165183RRKSRAKAVLENKITRKRK
2165184RRKSRAKAVLENKITRKRKP
3166184RKSRAKAVLENKITRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430046.10.0nuclear transcription factor Y subunit A-10
TrEMBLV4T1B60.0V4T1B6_9ROSI; Uncharacterized protein
STRINGXP_006430046.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-72nuclear factor Y, subunit A10