PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012188m | ||||||||
Common Name | CICLE_v10012182mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 326aa MW: 35569.7 Da PI: 4.6898 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 7.8e-06 | 298 | 321 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C+ C++sF++ L++H + H Ciclev10012188m 298 FPCKSCNRSFTTEGGLQSHTKAkH 321 89*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 298 | 320 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.006 | 298 | 321 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.741 | 298 | 325 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 300 | 321 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MSTLMEFWGV EVKSGQPLKI NPGDNKIVHL SQASLGEIKK DKGSESVYLY LKVDDKKLVL 60 GTLSAQKFPQ LSFDLAIEKD FELSHNWKNG SVYFTGYKLR TEGDDDDNSD SDEDKMDIRL 120 VSNGKPELQA KPLSEKPIAV EPSASTAKQN KKDVKPKQKA DGSDSDDSDL NTSSSDDDET 180 SDDENPNLVN RDGSSDESSG ELDESDDDED DEGTDESESG DEDEETPKKA ESNKKRPVES 240 ASKTHVPDKK AKFVTPQKTE ERKGVSHIAT PHPSKKSAKT LANSDQTKQQ PRKSGSSFPC 300 KSCNRSFTTE GGLQSHTKAK HGAPA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.918 | 0.0 | abscission zone| flower| vegetative tissue |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430307.1 | 0.0 | histone deacetylase HDT1 | ||||
TrEMBL | V4T1Y6 | 0.0 | V4T1Y6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430307.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 4e-28 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012188m |
Entrez Gene | 18039993 |