PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012151m
Common NameCICLE_v10012151mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 337aa    MW: 37284.4 Da    PI: 6.5017
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012151mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++++ G+g +W + +++ g+ R++k+c++rw++yl
  Ciclev10012151m 14 KGPWSPEEDAKLKEYIEKNGTGgNWIALPHKAGLMRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding41.14.1e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ +Ed ++  +++  G++ W+tIa+ ++ gRt++++k++w++
  Ciclev10012151m  69 GEFSDDEDRIICSLFASIGSR-WSTIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.75962IPR017930Myb domain
SuperFamilySSF466895.08E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002492.0E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-231569IPR009057Homeodomain-like
CDDcd001673.39E-81662No hitNo description
PROSITE profilePS5129421.2963117IPR017930Myb domain
SMARTSM007171.4E-1167115IPR001005SANT/Myb domain
PfamPF002492.3E-1169111IPR001005SANT/Myb domain
CDDcd001679.76E-870113No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KNGTGGNWIA LPHKAGLMRC GKSCRLRWLN  60
YLRPNINHGE FSDDEDRIIC SLFASIGSRW STIAAQLPGR TDNDIKNYWN TKLKKKLIGI  120
VNQQSQIKTH QAAVSSFSSL FQTSSSSSSS SSPSPSPTIS YNCNDINAYY TTTARSFTGL  180
ERNSSFSNSL LLSSNSCITA QHQVKEKIFM FGGDQASFSS SDGSCSNQQI SHGKEFDYEY  240
YGGRNNKCEQ MGLQNNLFYN GVEGDNKFMI SNVETPLDYG LEEIKQLISS SSSSCNNFLF  300
DENKTEESLV LLNDADWVLR TIAAVGSFDT SLDHIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491666.10.0transcription factor RAX2
RefseqXP_024038144.10.0transcription factor RAX2
TrEMBLV4SS010.0V4SS01_9ROSI; Uncharacterized protein
STRINGXP_006428450.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.15e-75MYB family protein