PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10012093m | ||||||||
Common Name | CICLE_v10012093mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 349aa MW: 39441.3 Da PI: 6.6022 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182.9 | 8e-57 | 12 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL++kv + +++ ++i evd++k+ePwdLp+++k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Ciclev10012093m 12 LPPGFRFHPTDEELITHYLTPKVFDGCFSA-RAIGEVDLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYK 104 79*************************999.89***************99999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg+kktLvfykgrapkg+kt+Wvmheyrle Ciclev10012093m 105 -AKALVGMKKTLVFYKGRAPKGQKTNWVMHEYRLE 138 .999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-64 | 8 | 162 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.801 | 12 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-30 | 13 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MEKYDDQEQI ELPPGFRFHP TDEELITHYL TPKVFDGCFS ARAIGEVDLN KCEPWDLPRR 60 AKMGEKEWYF FCVRDRKYPT GLRTNRATEA GYWKATGKDK EIYKAKALVG MKKTLVFYKG 120 RAPKGQKTNW VMHEYRLEGK YSAYDHPKTA KNEWVICRVF QKSGGGKKTH IQGMVKLGSF 180 GNGMGSSALP PLMDSSPYNS ETRTTINETF HVTCFSDALE DQKAQEDMID SFNNSLLASS 240 SSSNPHSEIS PASIFLSKSS FSNSLYADQI LPRIANMQYP DSFLMQDQSI LKMLLENHGP 300 NMKKNSKAEF SQDDSVVSNH EFIQGSFDDQ EDPSSSAGPV ALDCLWNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-55 | 1 | 168 | 6 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-55 | 1 | 168 | 9 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-55 | 1 | 168 | 6 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-55 | 1 | 168 | 6 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.20654 | 0.0 | abscission zone| fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ619349 | 0.0 | FJ619349.1 Poncirus trifoliata NAC domain protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006431201.1 | 0.0 | NAC domain-containing protein 100 | ||||
Swissprot | Q9FLJ2 | 1e-134 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | V4T4H4 | 0.0 | V4T4H4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006431201.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM400 | 28 | 174 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 1e-131 | NAC domain containing protein 100 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10012093m |
Entrez Gene | 18038984 |
Publications ? help Back to Top | |||
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