PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10012003m
Common NameCICLE_v10012003mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 370aa    MW: 40172.9 Da    PI: 5.7149
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10012003mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-1559104147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++e d  l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Ciclev10012003m  59 KGPWSPEQDAVLSELVSKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 104
                      79******************************.***********985 PP
2Myb_DNA-binding56.27.6e-18111155147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd+++v a++ +G++ W+ I+r ++ gRt++ +k++w++ 
  Ciclev10012003m 111 RKPFTDEEDQIIVAAHAVHGNK-WAVISRLLP-GRTDNAIKNHWNST 155
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.00954105IPR017930Myb domain
SuperFamilySSF466894.49E-2956152IPR009057Homeodomain-like
SMARTSM007175.6E-1358107IPR001005SANT/Myb domain
PfamPF002493.1E-1459104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2460112IPR009057Homeodomain-like
CDDcd001671.45E-1261103No hitNo description
PROSITE profilePS5129425.217106160IPR017930Myb domain
SMARTSM007172.0E-16110158IPR001005SANT/Myb domain
PfamPF002498.1E-15111155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-23113159IPR009057Homeodomain-like
CDDcd001672.51E-12113156No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKMEPQTETE KWKATVIEVD GGDAVEADAD VGADRGRSGD DSVVAVGEGS KRSGRSRVKG  60
PWSPEQDAVL SELVSKFGAR NWSLIARGIA GRSGKSCRLR WCNQLDPAVK RKPFTDEEDQ  120
IIVAAHAVHG NKWAVISRLL PGRTDNAIKN HWNSTLRRRG VELRRTMKLG SVNMMEDTNV  180
DKSKASSEET LSCGDVNSFK FLEEKDTSSL ENLNNHCGDK STTEVPSSQE TEEPPTLFRP  240
LARVSAFSVY NTLDDPETAS IHPRQTPSQG PLVQVTMPDA GTCKLLEGVY GERMVPHWCG  300
YGCCGIQHGG NCQSSLLGPE FFDFSGPPAF PSYELAAIAT DISNVAWLKS GLENSSVTVM  360
GNEAGRIKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-39581596107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00337DAPTransfer from AT3G09230Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429252.10.0transcription factor MYB1
SwissprotQ425751e-107MYB1_ARATH; Transcription factor MYB1
TrEMBLV4SP670.0V4SP67_9ROSI; Uncharacterized protein
STRINGXP_006429252.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM84922636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-109myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]