PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011968m
Common NameCICLE_v10011968mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 380aa    MW: 41280.9 Da    PI: 7.8801
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011968mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer111.64.1e-3570127359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                       v+YkeClkNhAas+Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+++
  Ciclev10011968m  70 VVTYKECLKNHAASIGGHALDGCGEFMPSPTATpSDPTSLKCAACGCHRNFHRREPDQ 127
                      589******************************9*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.3E-2971125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-1971132IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-3272124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.22573124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS000280111133IPR007087Zinc finger, C2H2
SuperFamilySSF466895.38E-19221293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-29222293IPR009057Homeodomain-like
TIGRFAMsTIGR015656.0E-26232288IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDITPTNNNT LNTNTNSKSP ETDTTDHHQT GATRIHSAKP LTFTNGVLKR HQPQPQHHQR  60
HHHHHHHPIV VTYKECLKNH AASIGGHALD GCGEFMPSPT ATPSDPTSLK CAACGCHRNF  120
HRREPDQDHH LPHVPTTATT ATIEYQPHHR HHPPPPVTQP PSRRSPSSAS PPPISSSYYP  180
SAPHMLLALS GNLQQSSAAA AVPQENHHIS NNHHHNNNNI MMSNSGGSSG GRKRFRTKFS  240
QSQKEKMFEF AERVGWKMQK RDDDLVHQFC NEVGVDRTVL KVWMHNNKST FAKRDLNGAG  300
GSGSGSVGGG IGRINLDDDN TGNDNINNSK SGDGDDQDEE EGINNNNNNG VRNLNHQFGS  360
ATESAAHVAN ANGGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212332901875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431147.10.0zinc-finger homeodomain protein 9
TrEMBLV4SUG10.0V4SUG1_9ROSI; Uncharacterized protein
STRINGXP_006431147.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-64homeobox protein 34