PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011938m
Common NameCICLE_v10011938mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 389aa    MW: 40876.2 Da    PI: 9.1103
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011938mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP137.25e-4388164177
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                      +CqvegC++dls+ak y++rhkvC +hsk+pvv+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk++
  Ciclev10011938m  88 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPVVTVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPT 164
                      6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-3582150IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.36886163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.29E-4187166IPR004333Transcription factor, SBP-box
PfamPF031108.5E-3389162IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MELGSDYLAE SGGGSGSGSG SGLSSAEPSL NGLKFGKKIY FEDVGTAGAP FPGSGSSSGS  60
GSGSGSGSGR KVRGVGGGMV TSGQQPPRCQ VEGCKVDLSD AKAYYSRHKV CGMHSKSPVV  120
TVAGLEQRFC QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPTSGPFLG TRYGRLSSSV  180
IENSSQGGGF LIDFSAYQMV GGRDGWPVTS VSKQVSGNQT TVTARHLPQP LWQNHSQDPP  240
PDRYLQCSTA GTGFSGPGIP CGGCFTGVAD SNCALSLLSN QPWGSKNPTP GHGVGDLMHA  300
HTKSVTQPVS PHGAAINQYP NMSWGFKGNA AGSSSHQMAP QLGLAPTSVP INSQFSGELE  360
SSQQSRQYMK LQHSRDYDDS NQQIHWSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A4e-31891621184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5022370.0FJ502237.1 Poncirus trifoliata squamosa promoter-binding protein (SPL9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429837.10.0squamosa promoter-binding-like protein 9
TrEMBLV4SQT50.0V4SQT5_9ROSI; Uncharacterized protein
STRINGXP_006429837.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21442775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.17e-67squamosa promoter binding protein-like 9