PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011897m
Common NameCICLE_v10011783mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 399aa    MW: 45253.6 Da    PI: 4.1392
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011897mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08238286247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ ++ ++v  ++       W++ +  ++  Rt ++++s+++++
  Ciclev10011897m 238 KNWTKEEENKFHEVVSSYPVSmgknFWDRLSLVFP-SRTKNELVSYYFNV 286
                      68***************98878888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-6236289IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-5237295IPR009057Homeodomain-like
SuperFamilySSF466895.08E-6237287IPR009057Homeodomain-like
PfamPF002492.2E-6238286IPR001005SANT/Myb domain
CDDcd001671.23E-8239287No hitNo description
PROSITE profilePS500906.516239287IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MLNLGKLLLL TWLHYEDGDG EQNINRCRDQ GRFLFGPVAE VSNGTEKEFE IGSDCISPFL  60
WANGLFAEGD ANSEEVYLSL FPEYFATEHQ IRTFLQSDEI YSSHLDHPPV KSVSIGPEYQ  120
ADVPEWCLQG SKNSLAHLDG SDRQVRLERL SGSCLVVDDD QGEKLLGTCV ISMPDSAPSA  180
NYYSQSLVTR NDCECLDKGS IRCVRQHVME AREKLRVNLG HKIFEELGFH EMGEEVSKNW  240
TKEEENKFHE VVSSYPVSMG KNFWDRLSLV FPSRTKNELV SYYFNVFILQ KRAEQNRFDP  300
LNIDSDDDEW QRCDLGAAEE DEESGVEFLS NQDVSAYQQD DHVENCQDDT EGGYLIDDCK  360
NDANVVHTVA TDEQEDGDVD DIPEPHIRDL FSHSSTDT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431271.10.0uncharacterized protein LOC18039444
TrEMBLV4SZI40.0V4SZI4_9ROSI; Uncharacterized protein
STRINGXP_006431271.10.0(Citrus clementina)