PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10011891m

Common Name

CICLE_v10011891mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 400aa MW: 45072.8 Da PI: 6.5157

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10011891m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.6	2e-52	14	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 + pGfrFhPtdeelv +yLk+k+++++l++ e ik+vdiyk++PwdLp + ++a+ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++ Ciclev10011891m 14 MLPGFRFHPTDEELVGFYLKRKIQQRPLPI-ELIKQVDIYKYDPWDLPkEFATAGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIY 106 579*************************.89***********445556889*********************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 s+ + + +glkk+Lvfy+gra kg ktdW+mhe+rl Ciclev10011891m 107 SSdGAKCIGLKKSLVFYRGRAAKGIKTDWMMHEFRL 142 955566**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.62E-57	13	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.298	14	173	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP 60 KEFATAGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG AKCIGLKKSL 120 VFYRGRAAKG IKTDWMMHEF RLPSLTYSAP QKKLLDKTIP PNDAWAICRI FKKTNSMAQR 180 ALSHSWISPF PETAASDILN QGAHCTQFSS ENVSCTTEIG SVIQLCGNND LQQASTTSFS 240 AFDIPTYKPL YPPLYKPSLP PASTGDLRNN FLFSPPEFSG PNECTNDAPS MLPNTAIFEN 300 IIKGSENNIE VEGQQQQSRG FSISVPQDMR GNITMEEDET AGSRKNPNDN NNWGTIRSVG 360 FPFSLPLNMP DAWKSNLPWD SPPCPSEMST TYSTNNCYT*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MDDKNEIDKI DDVMLPGFRF HPTDEELVGF YLKRKIQQRP LPIELIKQVD IYKYDPWDLP  60
KEFATAGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSDG AKCIGLKKSL  120
VFYRGRAAKG IKTDWMMHEF RLPSLTYSAP QKKLLDKTIP PNDAWAICRI FKKTNSMAQR  180
ALSHSWISPF PETAASDILN QGAHCTQFSS ENVSCTTEIG SVIQLCGNND LQQASTTSFS  240
AFDIPTYKPL YPPLYKPSLP PASTGDLRNN FLFSPPEFSG PNECTNDAPS MLPNTAIFEN  300
IIKGSENNIE VEGQQQQSRG FSISVPQDMR GNITMEEDET AGSRKNPNDN NNWGTIRSVG  360
FPFSLPLNMP DAWKSNLPWD SPPCPSEMST TYSTNNCYT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-51	5	176	7	168	NO APICAL MERISTEM PROTEIN
3ulx_A	6e-51	1	176	1	171	Stress-induced transcription factor NAC1
4dul_A	6e-51	5	176	7	168	NAC domain-containing protein 19
4dul_B	6e-51	5	176	7	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269\|PubMed:19081078}.
Uniprot	TISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269\|PubMed:19081078}.

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431114.1	0.0	protein FEZ isoform X1
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	V4UX55	0.0	V4UX55_9ROSI; Uncharacterized protein
STRING	XP_006431114.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-104	NAC family protein

Link Out ? help Back to Top
Phytozome	Ciclev10011891m
Entrez Gene	18038653

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]