PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011783m
Common NameCICLE_v10011783mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 431aa    MW: 48978.6 Da    PI: 4.2472
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011783mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.1e-08270318247
                      SSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ ++ ++v  ++       W++ +  ++  Rt ++++s+++++
  Ciclev10011783m 270 KNWTKEEENKFHEVVSSYPVSmgknFWDRLSLVFP-SRTKNELVSYYFNV 318
                      68***************98878888**********.***********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.3E-6268321IPR001005SANT/Myb domain
SuperFamilySSF466895.68E-6269319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-5269327IPR009057Homeodomain-like
PfamPF002492.5E-6270318IPR001005SANT/Myb domain
CDDcd001671.34E-8271319No hitNo description
PROSITE profilePS500906.516271319IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MIHKRTFHDE DCFEFPCKHP KQWECTNYLA PMVHMSPPAD GHQKPQTSDG DGEQNINRCR  60
DQGRFLFGPV AEVSNGTEKE FEIGSDCISP FLWANGLFAE GDANSEEVYL SLFPEYFATE  120
HQIRTFLQSD EIYSSHLDHP PVKSVSIGPE YQADVPEWCL QGSKNSLAHL DGSDRQVRLE  180
RLSGSCLVVD DDQGEKLLGT CVISMPDSAP SANYYSQSLV TRNDCECLDK GSIRCVRQHV  240
MEAREKLRVN LGHKIFEELG FHEMGEEVSK NWTKEEENKF HEVVSSYPVS MGKNFWDRLS  300
LVFPSRTKNE LVSYYFNVFI LQKRAEQNRF DPLNIDSDDD EWQRCDLGAA EEDEESGVEF  360
LSNQDVSAYQ QDDHVENCQD DTEGGYLIDD CKNDANVVHT VATDEQEDGD VDDIPEPHIR  420
DLFSHSSTDT *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431271.10.0uncharacterized protein LOC18039444
TrEMBLV4T4N30.0V4T4N3_9ROSI; Uncharacterized protein
STRINGXP_006431271.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1718322