PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011732m
Common NameCICLE_v10011732mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 442aa    MW: 48414.2 Da    PI: 4.9841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011732mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.11.1e-115794383374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lLl+cAe+v+ ++l  a+ lL ++sel+sp  ++ +R+ ayf+ AL+ar+++s+ ++y+ l++++ + ++s++ ++al+ ++ ++P++kfsh+
  Ciclev10011732m  79 GLLLQCAECVAMDNLDDATDLLPEISELSSPFVSSPERVGAYFAHALQARVVSSCLGTYSPLTTKSLTLSQSQKIFNALQSYNSICPLIKFSHF 172
                      58******************************************************************************************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      taNqaI +a++g+++vHiiD+di+qGlQWp L++ L sR+++  s+RiTg+gs    s+e le+tg+rLa+fA +lg+pf+fn+l  k  + ++
  Ciclev10011732m 173 TANQAIFQALDGADCVHIIDLDIMQGLQWPGLFHILVSRSKKIRSMRITGFGS----SSELLESTGRRLADFAMSLGLPFDFNPLEGKIGNIID 262
                      *****************************************************....9**************************999999999* PP

             GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      +++L v+pgE+++V++++  h l+d ++s       +L+++  l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+++s er++
  Ciclev10011732m 263 VSQLGVRPGETIVVHWMH--HCLYDITGSDLG----TLRMLTLLRPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDGLGADSIERHT 349
                      ****************99..777777777777....**********************.789******************************** PP

             GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vE++l+g ei+n+va  g +r+ + + +e+W e l+++GF+pv+ls + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  Ciclev10011732m 350 VEQQLFGCEIRNIVAVGGPKRTGEVK-VERWGEELKRVGFRPVSLSGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 438
                      ********************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.32451418IPR005202Transcription factor GRAS
PfamPF035143.7E-11379438IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLQSLVVPQS PINSSTAMKS KRVDRDDDDD NPNGDPSRAV AKRANVIEQE QKLQEQEEEA  60
EQHDVVVMEG ESAGLRLLGL LLQCAECVAM DNLDDATDLL PEISELSSPF VSSPERVGAY  120
FAHALQARVV SSCLGTYSPL TTKSLTLSQS QKIFNALQSY NSICPLIKFS HFTANQAIFQ  180
ALDGADCVHI IDLDIMQGLQ WPGLFHILVS RSKKIRSMRI TGFGSSSELL ESTGRRLADF  240
AMSLGLPFDF NPLEGKIGNI IDVSQLGVRP GETIVVHWMH HCLYDITGSD LGTLRMLTLL  300
RPKLITIVEQ DLSHGGSFLG RFVEALHYYS ALFDALGDGL GADSIERHTV EQQLFGCEIR  360
NIVAVGGPKR TGEVKVERWG EELKRVGFRP VSLSGNPAAQ ASLLLGMFPW KGYTLVEENG  420
CLKLGWKDLS LLTASAWQPS D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-160484394380Protein SCARECROW
5b3h_A1e-160484393379Protein SCARECROW
5b3h_D1e-160484393379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.82220.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429765.10.0scarecrow-like protein 23
RefseqXP_006481359.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLV4SVF60.0V4SVF6_9ROSI; Uncharacterized protein
STRINGXP_006481359.10.0(Citrus sinensis)
STRINGXP_006429765.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]