PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011604m
Common NameCICLE_v10011603mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 487aa    MW: 54201 Da    PI: 7.6947
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011604mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.27.6e-08359406448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d++ q+G g W+ I r +     +Rt+ +++++w+++l
  Ciclev10011604m 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 406
                      **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-11348413IPR009057Homeodomain-like
PROSITE profilePS5129413.847351410IPR017930Myb domain
SMARTSM007172.5E-8355408IPR001005SANT/Myb domain
CDDcd116601.08E-17357407No hitNo description
SuperFamilySSF466894.71E-16357416IPR009057Homeodomain-like
PfamPF139213.8E-6359413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDKGPLLLEN VRNMTSQRVK VEESFVPAFK DKAAEVSNLL AEPKCDHASV DGVLSFGREN  60
LGKSSGMDGF SYEFEFGFRT NCGGLDSFTT QGEDDLKLEV LDGLLDDIDE VDDFHAANDL  120
STVCDDFLLD IEFTEKVAKF DCGPVEGSHL GNSSSESHSP GASGSNVAVG MSDSSITALE  180
SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD NVLLSSILSK  240
CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK HPKVTPCNGS  300
SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID DRRKNQRMWT  360
LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY AHQKNKGEVD  420
PKHAMRSLPK PVLCRIRELA TIHPYPRVPY SKKCNGDTDS SRHPIKAKSA PFSSHGRNLR  480
TTIKEQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1343353KRKSKIDDRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.37930.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428745.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006428746.10.0uncharacterized protein LOC18039657 isoform X2
RefseqXP_006481484.10.0uncharacterized protein LOC102617973 isoform X2
RefseqXP_006481485.10.0uncharacterized protein LOC102617973 isoform X2
TrEMBLA0A067E9Z00.0A0A067E9Z0_CITSI; Uncharacterized protein
TrEMBLV4SXR40.0V4SXR4_9ROSI; Uncharacterized protein
STRINGXP_006481484.10.0(Citrus sinensis)
STRINGXP_006428745.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-23TRF-like 6